Analysis of interatomic Contacts of Structural Units in PDB entry:
8FZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FZ4 entry

There are 2 chains in PDB entry 8FZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38LEU 214
B
 SER 38LEU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8FZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 57Right-handed 310
Helix 2
AA2
A
58 73Right-handed alpha
Helix 3
AA3
A
98 111Right-handed alpha
Helix 4
AA4
A
119 135Right-handed alpha
Helix 5
AA5
A
136 139Right-handed 310
Helix 6
AA6
A
154 169Right-handed alpha
Helix 7
AA7
A
182 190Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
202 214Right-handed alpha
Helix 10
AB1
B
52 57Right-handed 310
Helix 11
AB2
B
58 73Right-handed alpha
Helix 12
AB3
B
98 111Right-handed alpha
Helix 13
AB4
B
119 135Right-handed alpha
Helix 14
AB5
B
136 139Right-handed 310
Helix 15
AB6
B
154 169Right-handed alpha
Helix 16
AB7
B
182 190Right-handed alpha
Helix 17
AB8
B
192 194Right-handed 310
Helix 18
AB9
B
202 214Right-handed alpha
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There are 2 sheets in PDB entry 8FZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
43 50parallel
Strand 4
A
141 147parallel
Strand 5
A
172 177parallel
Strand 6
A
196 198parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 96first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
43 50parallel
Strand 4
B
141 147parallel
Strand 5
B
172 177parallel
Strand 6
B
196 198parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il