Analysis of interatomic Contacts of Structural Units in PDB entry:
8FZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FZ8 entry

There is 1 chain in PDB entry 8FZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8FZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
66 79Right-handed alpha
Helix 5
AA5
A
86 90Right-handed 310
Helix 6
AA6
A
91 95Right-handed 310
Helix 7
AA7
A
98 111Right-handed alpha
Helix 8
AA8
A
112 136Right-handed alpha
Helix 9
AA9
A
141 146Right-handed alpha
Helix 10
AB1
A
149 160Right-handed alpha
Helix 11
AB2
A
162 164Right-handed 310
Helix 12
AB3
A
165 174Right-handed alpha
Helix 13
AB4
A
187 209Right-handed alpha
Helix 14
AB5
A
213 220Right-handed alpha
Helix 15
AB6
A
222 226Right-handed 310
Helix 16
AB7
A
228 244Right-handed alpha
Helix 17
AB8
A
244 260Right-handed alpha
Helix 18
AB9
A
261 271Right-handed alpha
Helix 19
AC1
A
274 287Right-handed alpha
Helix 20
AC2
A
317 323Right-handed alpha
Helix 21
AC3
A
356 375Right-handed alpha
Helix 22
AC4
A
383 387Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8FZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
313 316parallel
Strand 4
A
295 297anti-parallel
Strand 5
A
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 308anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
403 404anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il