Analysis of interatomic Contacts of Structural Units in PDB entry:
8FZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FZR entry

There are 2 chains in PDB entry 8FZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 503
R
 G 1 A 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8FZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
66 77Right-handed alpha
Helix 5
AA5
A
113 125Right-handed alpha
Helix 6
AA6
A
140 145Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
166 178Right-handed alpha
Helix 9
AA9
A
185 194Right-handed alpha
Helix 10
AB1
A
198 204Right-handed alpha
Helix 11
AB2
A
205 214Right-handed alpha
Helix 12
AB3
A
268 276Right-handed alpha
Helix 13
AB4
A
279 284Right-handed alpha
Helix 14
AB5
A
298 308Right-handed 310
Helix 15
AB6
A
322 326Right-handed 310
Helix 16
AB7
A
329 333Right-handed 310
Helix 17
AB8
A
372 376Right-handed 310
Helix 18
AB9
A
382 396Right-handed alpha
Helix 19
AC1
A
406 410Right-handed 310
Helix 20
AC2
A
413 418Right-handed 310
Helix 21
AC3
A
433 444Right-handed alpha
Helix 22
AC4
A
444 450Right-handed alpha
Helix 23
AC5
A
468 472Right-handed 310
Helix 24
AC6
A
473 485Right-handed alpha
Helix 25
AC7
A
489 493Right-handed 310
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There are 3 sheets in PDB entry 8FZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
495 498parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
84 87anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
252 260parallel
Strand 4
A
239 249anti-parallel
Strand 5
A
228 236anti-parallel
Strand 6
A
155 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il