Analysis of interatomic Contacts of Structural Units in PDB entry:
8G04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G04 entry

There are 3 chains in PDB entry 8G04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	VAL 173
B	ASP 27	ARG 482
C	ASP 27	ARG 482

There are 21 helices in PDB entry 8G04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	28	Right-handed 310
Helix 2	AA2	A	29	48	Right-handed alpha
Helix 3	AA3	A	68	75	Right-handed alpha
Helix 4	AA4	A	76	100	Right-handed alpha
Helix 5	AA5	A	105	130	Right-handed alpha
Helix 6	AA6	A	144	158	Right-handed alpha
Helix 7	AA7	A	158	167	Right-handed alpha
Helix 8	AA8	A	168	171	Right-handed 310
Helix 9	AA9	B	27	31	Right-handed 310
Helix 10	AB1	B	128	130	Right-handed 310
Helix 11	AB2	B	158	162	Right-handed 310
Helix 12	AB3	B	189	193	Right-handed 310
Helix 13	AB4	B	283	288	Right-handed 310
Helix 14	AB5	B	386	388	Right-handed 310
Helix 15	AB6	C	27	31	Right-handed 310
Helix 16	AB7	C	97	101	Right-handed 310
Helix 17	AB8	C	128	130	Right-handed 310
Helix 18	AB9	C	158	163	Right-handed 310
Helix 19	AC1	C	284	288	Right-handed 310
Helix 20	AC2	C	386	388	Right-handed 310
Helix 21	AC3	C	414	418	Right-handed 310

There are 19 sheets in PDB entry 8G04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	49	54	anti-parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	119	126	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	149	155	anti-parallel
Strand 3	B	238	244	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	165	173	anti-parallel
Strand 3	B	251	260	anti-parallel
Strand 4	B	276	279	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	298	304	anti-parallel
Strand 3	B	349	354	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	310	318	anti-parallel
Strand 3	B	361	371	anti-parallel
Strand 4	B	374	379	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	310	318	anti-parallel
Strand 3	B	361	371	anti-parallel
Strand 4	B	383	384	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	399	first strand
Strand 2	B	406	410	anti-parallel
Strand 3	B	446	449	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	438	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	458	466	anti-parallel
Strand 4	B	471	474	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	49	54	anti-parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	79	83	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	106	113	anti-parallel
Strand 4	C	122	126	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	143	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	238	243	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	165	173	anti-parallel
Strand 3	C	251	260	anti-parallel
Strand 4	C	276	279	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	294	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	352	354	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	310	318	anti-parallel
Strand 3	C	361	369	anti-parallel
Strand 4	C	376	379	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	310	318	anti-parallel
Strand 3	C	361	369	anti-parallel
Strand 4	C	383	384	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	406	409	anti-parallel
Strand 3	C	446	449	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	428	first strand
Strand 2	C	458	461	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G04