Analysis of interatomic Contacts of Structural Units in PDB entry:
8G05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G05 entry

There are 5 chains in PDB entry 8G05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASP 6	ARG 387
A	THR 4	PHE 354
B	SER 2	SER 343
E	ASP 1	LEU 247
G	THR 6	ARG 62

There are 35 helices in PDB entry 8G05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	15	34	Right-handed alpha
Helix 2	AA2	R	36	48	Right-handed alpha
Helix 3	AA3	R	49	52	Right-handed 310
Helix 4	AA4	R	55	66	Right-handed alpha
Helix 5	AA5	R	66	72	Right-handed alpha
Helix 6	AA6	R	79	84	Right-handed alpha
Helix 7	AA7	R	89	120	Right-handed alpha
Helix 8	AA8	R	127	132	Right-handed alpha
Helix 9	AA9	R	135	149	Right-handed alpha
Helix 10	AB1	R	177	189	Right-handed alpha
Helix 11	AB2	R	196	210	Right-handed alpha
Helix 12	AB3	R	315	330	Right-handed alpha
Helix 13	AB4	R	331	342	Right-handed alpha
Helix 14	AB5	R	348	358	Right-handed alpha
Helix 15	AB6	R	360	364	Right-handed 310
Helix 16	AB7	R	365	370	Right-handed alpha
Helix 17	AB8	R	374	387	Right-handed alpha
Helix 18	AB9	A	6	32	Right-handed alpha
Helix 19	AC1	A	45	53	Right-handed alpha
Helix 20	AC2	A	207	211	Right-handed 310
Helix 21	AC3	A	212	216	Right-handed 310
Helix 22	AC4	A	241	255	Right-handed alpha
Helix 23	AC5	A	270	281	Right-handed alpha
Helix 24	AC6	A	282	286	Right-handed 310
Helix 25	AC7	A	295	309	Right-handed alpha
Helix 26	AC8	A	331	352	Right-handed alpha
Helix 27	AC9	B	3	26	Right-handed alpha
Helix 28	AD1	B	29	34	Right-handed alpha
Helix 29	AD2	E	28	32	Right-handed 310
Helix 30	AD3	E	53	56	Right-handed 310
Helix 31	AD4	E	87	91	Right-handed 310
Helix 32	AD5	E	220	224	Right-handed 310
Helix 33	AD6	G	7	24	Right-handed alpha
Helix 34	AD7	G	29	43	Right-handed alpha
Helix 35	AD8	G	44	48	Right-handed 310

There are 13 sheets in PDB entry 8G05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	159	162	first strand
Strand 2	R	167	170	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	185	190	anti-parallel
Strand 6	E	194	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G05

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G05