Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G0K entry

There are 4 chains in PDB entry 8G0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 162	VAL 343
B	PHE 2	ILE 194
C	PHE 166	VAL 343
D	PHE 2	ILE 194

There are 36 helices in PDB entry 8G0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	174	178	Right-handed 310
Helix 2	AA2	A	181	200	Right-handed alpha
Helix 3	AA3	A	202	214	Right-handed alpha
Helix 4	AA4	A	223	245	Right-handed alpha
Helix 5	AA5	A	249	260	Right-handed alpha
Helix 6	AA6	A	262	267	Right-handed 310
Helix 7	AA7	A	304	315	Right-handed alpha
Helix 8	AA8	B	3	9	Right-handed alpha
Helix 9	AA9	B	19	25	Right-handed alpha
Helix 10	AB1	B	31	42	Right-handed alpha
Helix 11	AB2	B	55	67	Right-handed alpha
Helix 12	AB3	B	115	122	Right-handed alpha
Helix 13	AB4	B	123	125	Right-handed 310
Helix 14	AB5	B	126	133	Right-handed alpha
Helix 15	AB6	B	138	146	Right-handed alpha
Helix 16	AB7	B	160	164	Right-handed 310
Helix 17	AB8	B	168	170	Right-handed 310
Helix 18	AB9	B	177	188	Right-handed alpha
Helix 19	AC1	C	176	180	Right-handed 310
Helix 20	AC2	C	181	196	Right-handed alpha
Helix 21	AC3	C	207	215	Right-handed alpha
Helix 22	AC4	C	223	245	Right-handed alpha
Helix 23	AC5	C	249	260	Right-handed alpha
Helix 24	AC6	C	262	267	Right-handed 310
Helix 25	AC7	C	304	308	Right-handed alpha
Helix 26	AC8	D	3	9	Right-handed alpha
Helix 27	AC9	D	19	25	Right-handed alpha
Helix 28	AD1	D	31	42	Right-handed alpha
Helix 29	AD2	D	55	67	Right-handed alpha
Helix 30	AD3	D	115	122	Right-handed alpha
Helix 31	AD4	D	123	125	Right-handed 310
Helix 32	AD5	D	126	133	Right-handed alpha
Helix 33	AD6	D	138	146	Right-handed alpha
Helix 34	AD7	D	160	164	Right-handed 310
Helix 35	AD8	D	168	170	Right-handed 310
Helix 36	AD9	D	177	188	Right-handed alpha

There are 7 sheets in PDB entry 8G0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	334	335	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	341	342	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	B	43	46	anti-parallel
Strand 3	B	51	53	anti-parallel
Strand 4	B	73	81	anti-parallel
Strand 5	B	86	92	anti-parallel
Strand 6	B	98	103	anti-parallel
Strand 7	B	108	112	anti-parallel
Strand 8	B	192	193	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	172	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	341	342	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	43	46	anti-parallel
Strand 3	D	51	53	anti-parallel
Strand 4	D	73	81	anti-parallel
Strand 5	D	86	92	anti-parallel
Strand 6	D	98	103	anti-parallel
Strand 7	D	108	112	anti-parallel
Strand 8	D	192	193	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	157	first strand
Strand 2	D	172	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0K