Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G0M entry

There are 2 chains in PDB entry 8G0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 214	ALA 629
B	PRO 238	SER 444

There are 25 helices in PDB entry 8G0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	217	221	Right-handed 310
Helix 2	AA2	A	229	235	Right-handed alpha
Helix 3	AA3	A	240	246	Right-handed alpha
Helix 4	AA4	A	247	254	Right-handed alpha
Helix 5	AA5	A	286	300	Right-handed alpha
Helix 6	AA6	A	322	341	Right-handed alpha
Helix 7	AA7	A	349	353	Right-handed 310
Helix 8	AA8	A	355	371	Right-handed alpha
Helix 9	AA9	A	384	393	Right-handed alpha
Helix 10	AB1	A	411	426	Right-handed alpha
Helix 11	AB2	A	440	444	Right-handed 310
Helix 12	AB3	A	446	448	Right-handed 310
Helix 13	AB4	A	449	458	Right-handed alpha
Helix 14	AB5	A	469	473	Right-handed 310
Helix 15	AB6	A	475	479	Right-handed 310
Helix 16	AB7	A	504	507	Right-handed 310
Helix 17	AB8	A	508	514	Right-handed alpha
Helix 18	AB9	A	518	533	Right-handed alpha
Helix 19	AC1	A	533	539	Right-handed alpha
Helix 20	AC2	A	584	588	Right-handed 310
Helix 21	AC3	B	246	252	Right-handed alpha
Helix 22	AC4	B	309	315	Right-handed alpha
Helix 23	AC5	B	354	360	Right-handed 310
Helix 24	AC6	B	414	419	Right-handed alpha
Helix 25	AC7	B	432	434	Right-handed 310

There are 10 sheets in PDB entry 8G0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	375	379	parallel
Strand 3	A	344	347	parallel
Strand 4	A	303	307	parallel
Strand 5	A	258	261	parallel
Strand 6	A	224	227	parallel
Strand 7	A	463	467	parallel
Strand 8	A	432	433	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	276	280	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	544	first strand
Strand 2	A	550	556	anti-parallel
Strand 3	A	562	568	anti-parallel
Strand 4	A	621	626	anti-parallel
Strand 5	A	592	598	anti-parallel
Strand 6	A	608	610	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	615	616	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	300	307	anti-parallel
Strand 4	B	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	300	307	anti-parallel
Strand 4	B	293	294	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	436	441	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0M