Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G0W entry

There are 6 chains in PDB entry 8G0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 226	GLY 531
B	SER 222	GLY 531
C	GLN 1	THR 117
D	GLN 1	THR 114
E	PRO 226	GLY 531
F	SER 222	GLN 401

There are 20 helices in PDB entry 8G0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	233	237	Right-handed 310
Helix 2	AA2	A	359	362	Right-handed 310
Helix 3	AA3	A	454	465	Right-handed alpha
Helix 4	AA4	B	233	237	Right-handed 310
Helix 5	AA5	B	454	465	Right-handed alpha
Helix 6	AA6	C	86	90	Right-handed 310
Helix 7	AA7	C	101	107	Right-handed 310
Helix 8	AA8	D	86	90	Right-handed 310
Helix 9	AA9	D	101	107	Right-handed 310
Helix 10	AB1	E	233	237	Right-handed 310
Helix 11	AB2	E	359	362	Right-handed 310
Helix 12	AB3	E	454	465	Right-handed alpha
Helix 13	AB4	F	233	237	Right-handed 310
Helix 14	AB5	F	359	362	Right-handed 310
Helix 15	AB6	F	454	465	Right-handed alpha
Helix 16	AB7	G	86	90	Right-handed 310
Helix 17	AB8	G	101	107	Right-handed 310
Helix 18	AB9	H	61	64	Right-handed 310
Helix 19	AC1	H	86	90	Right-handed 310
Helix 20	AC2	H	101	107	Right-handed 310

There are 23 sheets in PDB entry 8G0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	248	252	anti-parallel
Strand 4	A	505	506	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	485	492	anti-parallel
Strand 5	A	472	478	anti-parallel
Strand 6	A	514	521	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	292	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	344	352	anti-parallel
Strand 5	A	329	337	anti-parallel
Strand 6	A	381	388	anti-parallel
Strand 7	A	286	292	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	248	252	anti-parallel
Strand 4	B	505	506	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	485	492	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	514	521	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	292	first strand
Strand 2	B	298	303	anti-parallel
Strand 3	B	364	368	anti-parallel
Strand 4	B	344	352	anti-parallel
Strand 5	B	329	337	anti-parallel
Strand 6	B	380	388	anti-parallel
Strand 7	B	286	292	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	109	110	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	114	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	16	26	anti-parallel
Strand 3	D	77	85	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	92	98	anti-parallel
Strand 5	D	109	110	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	451	first strand
Strand 2	E	429	437	anti-parallel
Strand 3	E	248	252	anti-parallel
Strand 4	E	505	506	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	451	first strand
Strand 2	E	429	437	anti-parallel
Strand 3	E	496	500	anti-parallel
Strand 4	E	485	492	anti-parallel
Strand 5	E	472	478	anti-parallel
Strand 6	E	514	521	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	401	first strand
Strand 2	E	327	337	anti-parallel
Strand 3	E	344	352	anti-parallel
Strand 4	E	364	369	anti-parallel
Strand 5	E	298	303	anti-parallel
Strand 6	E	286	292	anti-parallel
Strand 7	E	380	390	anti-parallel
Strand 8	E	440	442	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	401	first strand
Strand 2	E	327	337	anti-parallel
Strand 3	E	380	390	anti-parallel
Strand 4	E	440	442	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	451	first strand
Strand 2	F	429	437	anti-parallel
Strand 3	F	248	252	anti-parallel
Strand 4	F	505	506	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	451	first strand
Strand 2	F	429	437	anti-parallel
Strand 3	F	497	500	anti-parallel
Strand 4	F	485	492	anti-parallel
Strand 5	F	472	478	anti-parallel
Strand 6	F	514	521	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	442	first strand
Strand 2	F	380	389	parallel
Strand 3	F	329	337	anti-parallel
Strand 4	F	344	352	anti-parallel
Strand 5	F	364	369	anti-parallel
Strand 6	F	298	303	anti-parallel
Strand 7	F	286	292	anti-parallel
Strand 8	F	380	389	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	18	26	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	114	117	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	52	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	114	117	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	109	110	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	7	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	109	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G0W