Analysis of interatomic Contacts of Structural Units in PDB entry:
8G16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G16 entry

There are 4 chains in PDB entry 8G16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	GLU 335
B	GLY 2	GLU 335
C	GLY 2	GLU 335
D	GLY 2	GLU 335

There are 52 helices in PDB entry 8G16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	39	49	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	110	113	Right-handed 310
Helix 6	AA6	A	136	140	Right-handed 310
Helix 7	AA7	A	151	169	Right-handed alpha
Helix 8	AA8	A	196	200	Right-handed 310
Helix 9	AA9	A	212	221	Right-handed alpha
Helix 10	AB1	A	222	225	Right-handed 310
Helix 11	AB2	A	254	268	Right-handed alpha
Helix 12	AB3	A	282	287	Right-handed 310
Helix 13	AB4	A	317	334	Right-handed alpha
Helix 14	AB5	B	12	26	Right-handed alpha
Helix 15	AB6	B	39	49	Right-handed alpha
Helix 16	AB7	B	81	85	Right-handed 310
Helix 17	AB8	B	104	109	Right-handed alpha
Helix 18	AB9	B	110	113	Right-handed 310
Helix 19	AC1	B	136	140	Right-handed 310
Helix 20	AC2	B	151	169	Right-handed alpha
Helix 21	AC3	B	196	200	Right-handed 310
Helix 22	AC4	B	212	221	Right-handed alpha
Helix 23	AC5	B	222	225	Right-handed 310
Helix 24	AC6	B	254	268	Right-handed alpha
Helix 25	AC7	B	282	287	Right-handed 310
Helix 26	AC8	B	317	334	Right-handed alpha
Helix 27	AC9	C	12	26	Right-handed alpha
Helix 28	AD1	C	39	49	Right-handed alpha
Helix 29	AD2	C	81	85	Right-handed 310
Helix 30	AD3	C	104	109	Right-handed alpha
Helix 31	AD4	C	110	113	Right-handed 310
Helix 32	AD5	C	136	140	Right-handed 310
Helix 33	AD6	C	151	169	Right-handed alpha
Helix 34	AD7	C	196	200	Right-handed 310
Helix 35	AD8	C	212	221	Right-handed alpha
Helix 36	AD9	C	222	225	Right-handed 310
Helix 37	AE1	C	254	268	Right-handed alpha
Helix 38	AE2	C	282	287	Right-handed 310
Helix 39	AE3	C	317	334	Right-handed alpha
Helix 40	AE4	D	12	26	Right-handed alpha
Helix 41	AE5	D	39	49	Right-handed alpha
Helix 42	AE6	D	81	85	Right-handed 310
Helix 43	AE7	D	104	109	Right-handed alpha
Helix 44	AE8	D	110	113	Right-handed 310
Helix 45	AE9	D	136	140	Right-handed 310
Helix 46	AF1	D	151	169	Right-handed alpha
Helix 47	AF2	D	196	200	Right-handed 310
Helix 48	AF3	D	212	221	Right-handed alpha
Helix 49	AF4	D	222	225	Right-handed 310
Helix 50	AF5	D	254	268	Right-handed alpha
Helix 51	AF6	D	282	287	Right-handed 310
Helix 52	AF7	D	317	334	Right-handed alpha

There are 9 sheets in PDB entry 8G16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	29	34	parallel
Strand 5	A	5	9	parallel
Strand 6	A	94	97	parallel
Strand 7	A	118	121	parallel
Strand 8	A	146	148	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	228	234	anti-parallel
Strand 3	A	170	179	parallel
Strand 4	A	240	249	anti-parallel
Strand 5	A	307	315	anti-parallel
Strand 6	A	293	304	anti-parallel
Strand 7	A	274	277	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	29	34	parallel
Strand 5	B	5	9	parallel
Strand 6	B	94	97	parallel
Strand 7	B	118	121	parallel
Strand 8	B	146	148	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	228	234	anti-parallel
Strand 3	B	170	179	parallel
Strand 4	B	240	249	anti-parallel
Strand 5	B	307	315	anti-parallel
Strand 6	B	293	296	anti-parallel
Strand 7	B	274	277	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	228	234	anti-parallel
Strand 3	B	170	179	parallel
Strand 4	B	240	249	anti-parallel
Strand 5	B	307	315	anti-parallel
Strand 6	B	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	29	34	parallel
Strand 5	C	5	9	parallel
Strand 6	C	94	97	parallel
Strand 7	C	118	121	parallel
Strand 8	C	146	148	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	228	234	anti-parallel
Strand 3	C	170	179	parallel
Strand 4	C	240	249	anti-parallel
Strand 5	C	307	315	anti-parallel
Strand 6	C	293	304	anti-parallel
Strand 7	C	274	277	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	66	69	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	29	34	parallel
Strand 5	D	5	9	parallel
Strand 6	D	94	97	parallel
Strand 7	D	118	121	parallel
Strand 8	D	146	148	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	228	234	anti-parallel
Strand 3	D	170	179	parallel
Strand 4	D	240	249	anti-parallel
Strand 5	D	307	315	anti-parallel
Strand 6	D	293	304	anti-parallel
Strand 7	D	274	277	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G16

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G16