Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G1I entry

There are 4 chains in PDB entry 8G1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 1 U 98
A
 LYS 4GLN 1364
C
 C 1 A 31
D
 G 28 G 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8G1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
96 101Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
181 193Right-handed alpha
Helix 7
AA7
A
207 214Right-handed alpha
Helix 8
AA8
A
217 226Right-handed alpha
Helix 9
AA9
A
236 246Right-handed alpha
Helix 10
AB1
A
270 283Right-handed alpha
Helix 11
AB2
A
287 300Right-handed alpha
Helix 12
AB3
A
321 327Right-handed alpha
Helix 13
AB4
A
328 343Right-handed alpha
Helix 14
AB5
A
359 364Right-handed alpha
Helix 15
AB6
A
368 383Right-handed alpha
Helix 16
AB7
A
386 395Right-handed alpha
Helix 17
AB8
A
411 426Right-handed alpha
Helix 18
AB9
A
431 436Right-handed alpha
Helix 19
AC1
A
439 446Right-handed alpha
Helix 20
AC2
A
489 494Right-handed alpha
Helix 21
AC3
A
513 524Right-handed alpha
Helix 22
AC4
A
541 552Right-handed alpha
Helix 23
AC5
A
560 568Right-handed alpha
Helix 24
AC6
A
591 602Right-handed alpha
Helix 25
AC7
A
603 609Right-handed alpha
Helix 26
AC8
A
615 626Right-handed alpha
Helix 27
AC9
A
628 638Right-handed alpha
Helix 28
AD1
A
645 652Right-handed alpha
Helix 29
AD2
A
664 669Right-handed alpha
Helix 30
AD3
A
678 683Right-handed alpha
Helix 31
AD4
A
692 698Right-handed alpha
Helix 32
AD5
A
703 712Right-handed alpha
Helix 33
AD6
A
720 726Right-handed alpha
Helix 34
AD7
A
735 751Right-handed alpha
Helix 35
AD8
A
777 792Right-handed alpha
Helix 36
AD9
A
794 799Right-handed alpha
Helix 37
AE1
A
808 817Right-handed alpha
Helix 38
AE2
A
860 865Right-handed 310
Helix 39
AE3
A
872 886Right-handed alpha
Helix 40
AE4
A
888 890Right-handed 310
Helix 41
AE5
A
896 901Right-handed alpha
Helix 42
AE6
A
902 905Right-handed 310
Helix 43
AE7
A
910 920Right-handed alpha
Helix 44
AE8
A
925 940Right-handed alpha
Helix 45
AE9
A
960 971Right-handed alpha
Helix 46
AF1
A
980 983Right-handed 310
Helix 47
AF2
A
984 1001Right-handed alpha
Helix 48
AF3
A
1003 1007Right-handed 310
Helix 49
AF4
A
1031 1042Right-handed alpha
Helix 50
AF5
A
1043 1045Right-handed 310
Helix 51
AF6
A
1078 1088Right-handed alpha
Helix 52
AF7
A
1127 1132Right-handed alpha
Helix 53
AF8
A
1170 1177Right-handed alpha
Helix 54
AF9
A
1177 1186Right-handed alpha
Helix 55
AG1
A
1191 1195Right-handed 310
Helix 56
AG2
A
1229 1240Right-handed alpha
Helix 57
AG3
A
1254 1262Right-handed alpha
Helix 58
AG4
A
1263 1266Right-handed 310
Helix 59
AG5
A
1267 1278Right-handed alpha
Helix 60
AG6
A
1284 1297Right-handed alpha
Helix 61
AG7
A
1301 1310Right-handed alpha
Helix 62
AG8
A
1311 1315Right-handed 310
Helix 63
AG9
A
1340 1344Right-handed 310
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There are 7 sheets in PDB entry 8G1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 761parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
43 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1205anti-parallel
Strand 5
A
1211 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
948 949anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1064first strand
Strand 2
A
1074 1075anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il