Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G1N entry

There are 2 chains in PDB entry 8G1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ASN 201
B
 SER -2ASN 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8G1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
50 52Right-handed 310
Helix 4
AA4
A
75 80Right-handed alpha
Helix 5
AA5
A
81 90Right-handed alpha
Helix 6
AA6
A
91 95Right-handed 310
Helix 7
AA7
A
96 103Right-handed alpha
Helix 8
AA8
A
115 119Right-handed 310
Helix 9
AA9
A
125 131Right-handed 310
Helix 10
AB1
A
138 143Right-handed alpha
Helix 11
AB2
A
149 163Right-handed alpha
Helix 12
AB3
A
165 179Right-handed alpha
Helix 13
AB4
A
180 182Right-handed 310
Helix 14
AB5
B
-1 5Right-handed alpha
Helix 15
AB6
B
5 22Right-handed alpha
Helix 16
AB7
B
22 37Right-handed alpha
Helix 17
AB8
B
50 52Right-handed 310
Helix 18
AB9
B
75 79Right-handed 310
Helix 19
AC1
B
81 90Right-handed alpha
Helix 20
AC2
B
96 103Right-handed alpha
Helix 21
AC3
B
115 119Right-handed 310
Helix 22
AC4
B
126 132Right-handed 310
Helix 23
AC5
B
138 143Right-handed alpha
Helix 24
AC6
B
149 163Right-handed alpha
Helix 25
AC7
B
165 182Right-handed alpha
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There are 4 sheets in PDB entry 8G1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
54 60anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
135 137parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 48first strand
Strand 2
B
54 60anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
135 137parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il