Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G1Q entry

There are 4 chains in PDB entry 8G1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 PRO 1455ASP 1569
A
 MET 1MET 103
B
 MET 17CYS 112
C
 VAL 62GLU 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8G1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
1457 1471Right-handed alpha
Helix 2
AA2
H
1494 1501Right-handed alpha
Helix 3
AA3
H
1506 1516Right-handed alpha
Helix 4
AA4
H
1521 1540Right-handed alpha
Helix 5
AA5
H
1544 1567Right-handed alpha
Helix 6
AA6
A
28 36Right-handed alpha
Helix 7
AA7
A
56 61Right-handed 310
Helix 8
AA8
B
32 37Right-handed alpha
Helix 9
AA9
B
38 39Right-handed 310
Helix 10
AB1
B
40 44Right-handed 310
Helix 11
AB2
B
68 84Right-handed alpha
Helix 12
AB3
B
96 98Right-handed 310
Helix 13
AB4
B
99 109Right-handed alpha
Helix 14
AB5
C
157 168Right-handed alpha
Helix 15
AB6
C
171 178Right-handed 310
Helix 16
AB7
C
181 190Right-handed alpha
Helix 17
AB8
C
193 203Right-handed alpha
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There are 3 sheets in PDB entry 8G1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
2 9parallel
Strand 3
A
12 19anti-parallel
Strand 4
B
29 30parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 112first strand
Strand 2
C
71 78anti-parallel
Strand 3
C
147 152parallel
Strand 4
C
129 130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
C
87 89anti-parallel
Strand 3
C
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il