Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G1R entry

There are 5 chains in PDB entry 8G1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 8	VAL 338
B	GLY 8	VAL 338
C	GLY 8	VAL 338
D	GLY 8	VAL 338
E	GLN 34	GLN 172

There are 44 helices in PDB entry 8G1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed 310
Helix 2	AA2	A	24	30	Right-handed alpha
Helix 3	AA3	A	33	35	Right-handed 310
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	107	139	Right-handed alpha
Helix 6	AA6	A	158	164	Right-handed alpha
Helix 7	AA7	A	179	196	Right-handed alpha
Helix 8	AA8	A	209	217	Right-handed alpha
Helix 9	AA9	A	219	228	Right-handed alpha
Helix 10	AB1	A	234	240	Right-handed alpha
Helix 11	AB2	A	327	330	Right-handed 310
Helix 12	AB3	B	13	19	Right-handed 310
Helix 13	AB4	B	24	29	Right-handed alpha
Helix 14	AB5	B	109	140	Right-handed alpha
Helix 15	AB6	B	158	163	Right-handed alpha
Helix 16	AB7	B	179	196	Right-handed alpha
Helix 17	AB8	B	210	218	Right-handed alpha
Helix 18	AB9	B	219	227	Right-handed alpha
Helix 19	AC1	B	235	242	Right-handed alpha
Helix 20	AC2	C	13	19	Right-handed 310
Helix 21	AC3	C	24	30	Right-handed alpha
Helix 22	AC4	C	93	98	Right-handed 310
Helix 23	AC5	C	107	140	Right-handed alpha
Helix 24	AC6	C	158	163	Right-handed alpha
Helix 25	AC7	C	179	193	Right-handed alpha
Helix 26	AC8	C	209	218	Right-handed alpha
Helix 27	AC9	C	219	229	Right-handed alpha
Helix 28	AD1	C	235	241	Right-handed alpha
Helix 29	AD2	C	327	330	Right-handed 310
Helix 30	AD3	D	13	19	Right-handed 310
Helix 31	AD4	D	24	30	Right-handed alpha
Helix 32	AD5	D	108	139	Right-handed alpha
Helix 33	AD6	D	159	164	Right-handed alpha
Helix 34	AD7	D	180	196	Right-handed alpha
Helix 35	AD8	D	209	218	Right-handed alpha
Helix 36	AD9	D	222	228	Right-handed alpha
Helix 37	AE1	D	235	241	Right-handed alpha
Helix 38	AE2	D	327	330	Right-handed 310
Helix 39	AE3	E	41	49	Right-handed alpha
Helix 40	AE4	E	64	69	Right-handed 310
Helix 41	AE5	E	72	81	Right-handed alpha
Helix 42	AE6	E	110	124	Right-handed alpha
Helix 43	AE7	E	131	135	Right-handed 310
Helix 44	AE8	E	150	171	Right-handed alpha

There are 21 sheets in PDB entry 8G1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	300	305	anti-parallel
Strand 3	A	314	325	anti-parallel
Strand 4	A	280	284	anti-parallel
Strand 5	A	37	38	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	300	305	anti-parallel
Strand 3	A	314	325	anti-parallel
Strand 4	A	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	76	80	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	332	337	parallel
Strand 3	A	268	272	anti-parallel
Strand 4	A	205	208	anti-parallel
Strand 5	A	254	258	parallel
Strand 6	A	248	251	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	301	305	anti-parallel
Strand 3	B	314	325	anti-parallel
Strand 4	B	280	284	anti-parallel
Strand 5	B	37	39	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	301	305	anti-parallel
Strand 3	B	314	325	anti-parallel
Strand 4	B	83	86	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	76	80	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	332	337	parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	203	205	anti-parallel
Strand 5	B	254	259	parallel
Strand 6	B	208	209	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	332	337	parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	203	205	anti-parallel
Strand 5	B	254	259	parallel
Strand 6	B	248	251	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	300	305	anti-parallel
Strand 3	C	314	325	anti-parallel
Strand 4	C	280	284	anti-parallel
Strand 5	C	37	39	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	300	305	anti-parallel
Strand 3	C	314	325	anti-parallel
Strand 4	C	83	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	76	80	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	332	333	parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	203	208	anti-parallel
Strand 5	C	254	258	parallel
Strand 6	C	248	251	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	303	305	anti-parallel
Strand 3	D	314	316	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	280	284	parallel
Strand 3	D	322	325	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	49	first strand
Strand 2	D	75	80	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	318	320	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	332	333	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	336	337	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	254	258	anti-parallel
Strand 3	D	204	208	parallel
Strand 4	D	270	273	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	100	104	parallel
Strand 3	E	144	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1R