Analysis of interatomic Contacts of Structural Units in PDB entry:
8G1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G1Y entry

There are 2 chains in PDB entry 8G1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1LEU 494
B
 ALA 0LEU 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8G1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 24Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
68 80Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
118 130Right-handed alpha
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
172 181Right-handed alpha
Helix 9
AA9
A
195 209Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
230 251Right-handed alpha
Helix 12
AB3
A
269 281Right-handed alpha
Helix 13
AB4
A
296 305Right-handed alpha
Helix 14
AB5
A
318 322Right-handed 310
Helix 15
AB6
A
328 337Right-handed alpha
Helix 16
AB7
A
340 355Right-handed alpha
Helix 17
AB8
A
363 368Right-handed alpha
Helix 18
AB9
A
376 392Right-handed alpha
Helix 19
AC1
A
396 414Right-handed alpha
Helix 20
AC2
A
426 429Right-handed 310
Helix 21
AC3
A
430 440Right-handed alpha
Helix 22
AC4
A
445 458Right-handed alpha
Helix 23
AC5
A
467 471Right-handed 310
Helix 24
AC6
A
483 492Right-handed alpha
Helix 25
AC7
B
16 24Right-handed alpha
Helix 26
AC8
B
43 48Right-handed alpha
Helix 27
AC9
B
51 64Right-handed alpha
Helix 28
AD1
B
68 80Right-handed alpha
Helix 29
AD2
B
112 117Right-handed alpha
Helix 30
AD3
B
118 130Right-handed alpha
Helix 31
AD4
B
145 155Right-handed alpha
Helix 32
AD5
B
172 181Right-handed alpha
Helix 33
AD6
B
195 209Right-handed alpha
Helix 34
AD7
B
209 219Right-handed alpha
Helix 35
AD8
B
230 251Right-handed alpha
Helix 36
AD9
B
269 281Right-handed alpha
Helix 37
AE1
B
296 305Right-handed alpha
Helix 38
AE2
B
318 322Right-handed 310
Helix 39
AE3
B
328 337Right-handed alpha
Helix 40
AE4
B
340 355Right-handed alpha
Helix 41
AE5
B
363 368Right-handed alpha
Helix 42
AE6
B
376 392Right-handed alpha
Helix 43
AE7
B
396 414Right-handed alpha
Helix 44
AE8
B
426 429Right-handed 310
Helix 45
AE9
B
430 440Right-handed alpha
Helix 46
AF1
B
445 458Right-handed alpha
Helix 47
AF2
B
467 471Right-handed 310
Helix 48
AF3
B
483 493Right-handed alpha
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There are 8 sheets in PDB entry 8G1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
5 7anti-parallel
Strand 3
A
32 34anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
419 423parallel
Strand 4
A
260 265parallel
Strand 5
A
285 292parallel
Strand 6
A
370 374parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
135 141parallel
Strand 3
A
160 167parallel
Strand 4
A
187 193parallel
Strand 5
A
477 480parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
356 358anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
5 7anti-parallel
Strand 3
B
32 34anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
99 102anti-parallel
Strand 3
B
419 423parallel
Strand 4
B
260 265parallel
Strand 5
B
285 292parallel
Strand 6
B
370 374parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 224first strand
Strand 2
B
135 141parallel
Strand 3
B
160 167parallel
Strand 4
B
187 193parallel
Strand 5
B
477 480parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
356 358anti-parallel
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