Analysis of interatomic Contacts of Structural Units in PDB entry:
8G26


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G26 entry

There are 3 chains in PDB entry 8G26 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ARG 238
B
 ILE 29GLN 246
C
 ALA 42LYS 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 8G26. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
164 169Right-handed alpha
Helix 3
AA3
A
229 238Right-handed alpha
Helix 4
AA4
B
67 71Right-handed 310
Helix 5
AA5
B
75 78Right-handed 310
Helix 6
AA6
B
237 246Right-handed alpha
Helix 7
AA7
C
74 91Right-handed alpha
Helix 8
AA8
C
93 100Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8G26. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
136 141anti-parallel
Strand 4
A
199 202anti-parallel
Strand 5
A
205 213anti-parallel
Strand 6
A
221 225anti-parallel
Strand 7
A
179 182anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
136 141anti-parallel
Strand 4
A
199 202anti-parallel
Strand 5
A
205 213anti-parallel
Strand 6
C
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
102 109anti-parallel
Strand 3
C
134 142anti-parallel
Strand 4
C
45 54parallel
Strand 5
C
62 68anti-parallel
Strand 6
A
40 50anti-parallel
Strand 7
A
53 56anti-parallel
Strand 8
A
105 109anti-parallel
Strand 9
A
82 91anti-parallel
Strand 10
A
64 69anti-parallel
Strand 11
A
30 37anti-parallel
Strand 12
A
40 50anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
169 176anti-parallel
Strand 3
B
149 154anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
169 176anti-parallel
Strand 3
B
185 188anti-parallel
Strand 4
B
229 233anti-parallel
Strand 5
B
213 219anti-parallel
Strand 6
C
123 125anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
51 60anti-parallel
Strand 3
B
63 66anti-parallel
Strand 4
B
118 122anti-parallel
Strand 5
B
96 105anti-parallel
Strand 6
B
80 83anti-parallel
Strand 7
B
43 48anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 73first strand
Strand 2
C
129 130anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il