Analysis of interatomic Contacts of Structural Units in PDB entry:
8G2Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G2Y entry

There are 5 chains in PDB entry 8G2Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	VAL 394
B	GLY 41	ASN 340
G	ARG 13	LEU 50
N	GLN 1	VAL 126
R	THR 567	LEU 848

There are 22 helices in PDB entry 8G2Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	40	Right-handed alpha
Helix 2	AA2	A	252	278	Right-handed alpha
Helix 3	AA3	A	293	303	Right-handed alpha
Helix 4	AA4	A	312	316	Right-handed 310
Helix 5	AA5	A	332	352	Right-handed alpha
Helix 6	AA6	A	370	391	Right-handed alpha
Helix 7	AA7	G	14	24	Right-handed alpha
Helix 8	AA8	G	29	45	Right-handed alpha
Helix 9	AA9	G	46	48	Right-handed 310
Helix 10	AB1	N	87	91	Right-handed 310
Helix 11	AB2	R	569	573	Right-handed 310
Helix 12	AB3	R	582	608	Right-handed alpha
Helix 13	AB4	R	619	647	Right-handed alpha
Helix 14	AB5	R	656	688	Right-handed alpha
Helix 15	AB6	R	694	722	Right-handed alpha
Helix 16	AB7	R	740	770	Right-handed alpha
Helix 17	AB8	R	786	801	Right-handed alpha
Helix 18	AB9	R	802	805	Right-handed 310
Helix 19	AC1	R	806	811	Right-handed alpha
Helix 20	AC2	R	817	829	Right-handed alpha
Helix 21	AC3	R	829	838	Right-handed alpha
Helix 22	AC4	R	842	848	Right-handed alpha

There are 11 sheets in PDB entry 8G2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	217	223	parallel
Strand 3	A	208	214	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	243	249	parallel
Strand 3	A	286	292	parallel
Strand 4	A	359	363	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	329	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	79	82	anti-parallel
Strand 4	B	89	93	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	4	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	70	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	123	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G2Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G2Y