Analysis of interatomic Contacts of Structural Units in PDB entry:
8G3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G3B entry

There are 5 chains in PDB entry 8G3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 646
B
 ILE 3LEU 246
C
 ILE 3LEU 246
D
 MET 1VAL 334
E
 MET 1VAL 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 71 helices in PDB entry 8G3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
18 41Right-handed alpha
Helix 3
AA3
A
42 47Right-handed 310
Helix 4
AA4
A
56 81Right-handed alpha
Helix 5
AA5
A
83 94Right-handed alpha
Helix 6
AA6
A
99 122Right-handed alpha
Helix 7
AA7
A
126 138Right-handed alpha
Helix 8
AA8
A
149 176Right-handed alpha
Helix 9
AA9
A
199 220Right-handed alpha
Helix 10
AB1
A
229 268Right-handed alpha
Helix 11
AB2
A
272 286Right-handed alpha
Helix 12
AB3
A
290 316Right-handed alpha
Helix 13
AB4
A
316 325Right-handed alpha
Helix 14
AB5
A
333 346Right-handed alpha
Helix 15
AB6
A
379 382Right-handed 310
Helix 16
AB7
A
409 416Right-handed alpha
Helix 17
AB8
A
461 472Right-handed alpha
Helix 18
AB9
A
493 505Right-handed alpha
Helix 19
AC1
A
514 556Right-handed alpha
Helix 20
AC2
A
557 565Right-handed alpha
Helix 21
AC3
A
570 602Right-handed alpha
Helix 22
AC4
A
603 608Right-handed 310
Helix 23
AC5
A
614 644Right-handed alpha
Helix 24
AC6
B
45 54Right-handed alpha
Helix 25
AC7
B
75 86Right-handed alpha
Helix 26
AC8
B
101 108Right-handed alpha
Helix 27
AC9
B
109 113Right-handed 310
Helix 28
AD1
B
117 131Right-handed alpha
Helix 29
AD2
B
133 137Right-handed 310
Helix 30
AD3
B
148 159Right-handed alpha
Helix 31
AD4
B
175 193Right-handed alpha
Helix 32
AD5
B
203 208Right-handed alpha
Helix 33
AD6
B
231 246Right-handed alpha
Helix 34
AD7
C
45 54Right-handed alpha
Helix 35
AD8
C
75 86Right-handed alpha
Helix 36
AD9
C
101 108Right-handed alpha
Helix 37
AE1
C
116 132Right-handed alpha
Helix 38
AE2
C
145 157Right-handed alpha
Helix 39
AE3
C
175 193Right-handed alpha
Helix 40
AE4
C
203 208Right-handed alpha
Helix 41
AE5
C
233 246Right-handed alpha
Helix 42
AE6
D
2 7Right-handed alpha
Helix 43
AE7
D
9 30Right-handed alpha
Helix 44
AE8
D
36 72Right-handed alpha
Helix 45
AE9
D
75 79Right-handed 310
Helix 46
AF1
D
84 138Right-handed alpha
Helix 47
AF2
D
142 169Right-handed alpha
Helix 48
AF3
D
171 176Right-handed alpha
Helix 49
AF4
D
183 194Right-handed alpha
Helix 50
AF5
D
194 202Right-handed alpha
Helix 51
AF6
D
217 235Right-handed alpha
Helix 52
AF7
D
264 268Right-handed 310
Helix 53
AF8
D
281 285Right-handed 310
Helix 54
AF9
D
290 300Right-handed alpha
Helix 55
AG1
D
324 327Right-handed 310
Helix 56
AG2
D
328 334Right-handed alpha
Helix 57
AG3
E
2 9Right-handed alpha
Helix 58
AG4
E
11 26Right-handed alpha
Helix 59
AG5
E
35 61Right-handed alpha
Helix 60
AG6
E
62 71Right-handed alpha
Helix 61
AG7
E
84 138Right-handed alpha
Helix 62
AG8
E
143 169Right-handed alpha
Helix 63
AG9
E
171 176Right-handed alpha
Helix 64
AH1
E
183 194Right-handed alpha
Helix 65
AH2
E
194 202Right-handed alpha
Helix 66
AH3
E
218 235Right-handed alpha
Helix 67
AH4
E
264 271Right-handed 310
Helix 68
AH5
E
281 286Right-handed 310
Helix 69
AH6
E
290 300Right-handed alpha
Helix 70
AH7
E
324 327Right-handed 310
Helix 71
AH8
E
328 333Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 8G3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
511 512anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
485 486anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
383 388anti-parallel
Strand 4
A
457 459parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
436 439parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
4 10anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
164 168parallel
Strand 3
B
196 200parallel
Strand 4
B
35 39parallel
Strand 5
B
212 215parallel
Strand 6
B
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
27 29anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
213 215parallel
Strand 3
C
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
164 167parallel
Strand 3
C
196 199parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 182first strand
Strand 2
D
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 209first strand
Strand 2
D
241 248parallel
Strand 3
D
251 258anti-parallel
Strand 4
D
315 322anti-parallel
Strand 5
D
305 311anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
178 182first strand
Strand 2
E
213 217anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
204 209first strand
Strand 2
E
240 248parallel
Strand 3
E
251 258anti-parallel
Strand 4
E
315 321anti-parallel
Strand 5
E
305 311anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il