Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 8G3K entry
There are 2 chains in PDB entry 8G3K
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
ASP 24 | LYS 165 |
B
|
SER 23 | LEU 171 |
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There are 11
helices in PDB entry 8G3K. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 24 |
45 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 46 |
48 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 49 |
72 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 80 |
96 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 108 |
136 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 138 |
165 | Right-handed alpha |
| Helix 7 |
AA7 | B
| 24 |
46 | Right-handed alpha |
| Helix 8 |
AA8 | B
| 48 |
72 | Right-handed alpha |
| Helix 9 |
AA9 | B
| 79 |
98 | Right-handed alpha |
| Helix 10 |
AB1 | B
| 109 |
134 | Right-handed alpha |
| Helix 11 |
AB2 | B
| 139 |
171 | Right-handed alpha |
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There are no sheets in PDB entry
8G3K
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il