Analysis of interatomic Contacts of Structural Units in PDB entry:
8G3O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G3O entry

There are 10 chains in PDB entry 8G3O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 1	SER 130
F	GLU 1	THR 110
A	GLN 1	SER 130
D	GLU 1	THR 110
C	GLN 1	SER 130
I	GLU 1	THR 110
G	ALA 82	THR 469
H	ALA 82	THR 469
B	ALA 82	THR 469
J	ALA 82	THR 469

There are 20 helices in PDB entry 8G3O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	62	65	Right-handed 310
Helix 2	AA2	E	87	91	Right-handed 310
Helix 3	AA3	F	79	83	Right-handed 310
Helix 4	AA4	A	62	65	Right-handed 310
Helix 5	AA5	A	87	91	Right-handed 310
Helix 6	AA6	D	79	83	Right-handed 310
Helix 7	AA7	C	62	65	Right-handed 310
Helix 8	AA8	C	87	91	Right-handed 310
Helix 9	AA9	I	79	83	Right-handed 310
Helix 10	AB1	G	104	110	Right-handed alpha
Helix 11	AB2	G	142	146	Right-handed 310
Helix 12	AB3	G	247	252	Right-handed alpha
Helix 13	AB4	H	104	110	Right-handed alpha
Helix 14	AB5	H	142	146	Right-handed 310
Helix 15	AB6	H	247	252	Right-handed alpha
Helix 16	AB7	B	104	110	Right-handed alpha
Helix 17	AB8	B	142	146	Right-handed 310
Helix 18	AB9	B	247	251	Right-handed alpha
Helix 19	AC1	J	104	110	Right-handed alpha
Helix 20	AC2	J	142	146	Right-handed 310

There are 42 sheets in PDB entry 8G3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	122	126	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	122	126	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	115	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	109	110	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	78	84	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	122	126	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	122	126	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	115	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	109	110	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	103	107	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	115	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	109	110	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	103	107	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	102	first strand
Strand 2	G	439	449	anti-parallel
Strand 3	G	418	429	anti-parallel
Strand 4	G	407	413	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	124	first strand
Strand 2	G	129	139	anti-parallel
Strand 3	G	157	162	anti-parallel
Strand 4	G	172	176	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	184	first strand
Strand 2	G	189	197	anti-parallel
Strand 3	G	200	207	anti-parallel
Strand 4	G	210	216	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	231	233	first strand
Strand 2	G	236	241	anti-parallel
Strand 3	G	253	258	anti-parallel
Strand 4	G	261	267	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	276	283	first strand
Strand 2	G	286	292	anti-parallel
Strand 3	G	301	305	anti-parallel
Strand 4	G	312	316	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	352	356	first strand
Strand 2	G	359	364	anti-parallel
Strand 3	G	372	379	anti-parallel
Strand 4	G	391	403	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	102	first strand
Strand 2	H	439	449	anti-parallel
Strand 3	H	418	429	anti-parallel
Strand 4	H	407	413	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	124	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	157	162	anti-parallel
Strand 4	H	172	176	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	184	first strand
Strand 2	H	189	197	anti-parallel
Strand 3	H	200	207	anti-parallel
Strand 4	H	210	216	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	231	233	first strand
Strand 2	H	236	241	anti-parallel
Strand 3	H	253	258	anti-parallel
Strand 4	H	261	267	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	276	283	first strand
Strand 2	H	286	292	anti-parallel
Strand 3	H	301	305	anti-parallel
Strand 4	H	312	316	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	352	356	first strand
Strand 2	H	359	364	anti-parallel
Strand 3	H	372	379	anti-parallel
Strand 4	H	391	403	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	418	429	anti-parallel
Strand 4	B	407	413	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	124	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	172	176	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	184	first strand
Strand 2	B	189	197	anti-parallel
Strand 3	B	200	207	anti-parallel
Strand 4	B	210	216	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	236	242	anti-parallel
Strand 3	B	252	258	anti-parallel
Strand 4	B	261	267	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	283	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	301	305	anti-parallel
Strand 4	B	312	316	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	372	379	anti-parallel
Strand 4	B	391	403	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	102	first strand
Strand 2	J	439	449	anti-parallel
Strand 3	J	418	429	anti-parallel
Strand 4	J	407	413	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	124	first strand
Strand 2	J	129	139	anti-parallel
Strand 3	J	157	162	anti-parallel
Strand 4	J	172	176	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	184	first strand
Strand 2	J	189	197	anti-parallel
Strand 3	J	200	207	anti-parallel
Strand 4	J	210	216	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	231	233	first strand
Strand 2	J	236	244	anti-parallel
Strand 3	J	250	258	anti-parallel
Strand 4	J	261	267	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	276	283	first strand
Strand 2	J	286	292	anti-parallel
Strand 3	J	301	305	anti-parallel
Strand 4	J	312	316	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	352	356	first strand
Strand 2	J	359	364	anti-parallel
Strand 3	J	372	379	anti-parallel
Strand 4	J	391	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G3O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G3O