Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G4C entry

There are 5 chains in PDB entry 8G4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 646
B
 HIS 1GLY 248
C
 HIS 1GLY 248
D
 MET 1VAL 334
E
 MET 1VAL 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8G4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
19 37Right-handed alpha
Helix 4
AA4
A
41 47Right-handed 310
Helix 5
AA5
A
55 82Right-handed alpha
Helix 6
AA6
A
84 94Right-handed alpha
Helix 7
AA7
A
96 106Right-handed alpha
Helix 8
AA8
A
107 126Right-handed alpha
Helix 9
AA9
A
126 138Right-handed alpha
Helix 10
AB1
A
149 177Right-handed alpha
Helix 11
AB2
A
179 184Right-handed 310
Helix 12
AB3
A
198 223Right-handed alpha
Helix 13
AB4
A
229 267Right-handed alpha
Helix 14
AB5
A
272 286Right-handed alpha
Helix 15
AB6
A
287 289Right-handed 310
Helix 16
AB7
A
290 316Right-handed alpha
Helix 17
AB8
A
316 325Right-handed alpha
Helix 18
AB9
A
333 348Right-handed alpha
Helix 19
AC1
A
409 416Right-handed alpha
Helix 20
AC2
A
447 452Right-handed alpha
Helix 21
AC3
A
461 472Right-handed alpha
Helix 22
AC4
A
493 505Right-handed alpha
Helix 23
AC5
A
513 554Right-handed alpha
Helix 24
AC6
A
557 563Right-handed alpha
Helix 25
AC7
A
570 603Right-handed alpha
Helix 26
AC8
A
603 608Right-handed alpha
Helix 27
AC9
A
613 644Right-handed alpha
Helix 28
AD1
B
15 19Right-handed 310
Helix 29
AD2
B
45 54Right-handed alpha
Helix 30
AD3
B
76 86Right-handed alpha
Helix 31
AD4
B
101 107Right-handed alpha
Helix 32
AD5
B
108 112Right-handed 310
Helix 33
AD6
B
117 129Right-handed alpha
Helix 34
AD7
B
133 137Right-handed 310
Helix 35
AD8
B
140 144Right-handed 310
Helix 36
AD9
B
145 159Right-handed alpha
Helix 37
AE1
B
175 193Right-handed alpha
Helix 38
AE2
B
203 208Right-handed alpha
Helix 39
AE3
B
231 248Right-handed alpha
Helix 40
AE4
C
45 54Right-handed alpha
Helix 41
AE5
C
75 86Right-handed alpha
Helix 42
AE6
C
101 107Right-handed alpha
Helix 43
AE7
C
108 112Right-handed 310
Helix 44
AE8
C
116 132Right-handed alpha
Helix 45
AE9
C
133 137Right-handed 310
Helix 46
AF1
C
145 157Right-handed alpha
Helix 47
AF2
C
175 193Right-handed alpha
Helix 48
AF3
C
206 210Right-handed 310
Helix 49
AF4
C
233 248Right-handed alpha
Helix 50
AF5
D
2 9Right-handed alpha
Helix 51
AF6
D
9 30Right-handed alpha
Helix 52
AF7
D
36 61Right-handed alpha
Helix 53
AF8
D
62 72Right-handed alpha
Helix 54
AF9
D
84 138Right-handed alpha
Helix 55
AG1
D
143 169Right-handed alpha
Helix 56
AG2
D
183 194Right-handed alpha
Helix 57
AG3
D
194 202Right-handed alpha
Helix 58
AG4
D
217 235Right-handed alpha
Helix 59
AG5
D
268 273Right-handed 310
Helix 60
AG6
D
281 285Right-handed 310
Helix 61
AG7
D
290 300Right-handed alpha
Helix 62
AG8
D
324 326Right-handed 310
Helix 63
AG9
D
327 334Right-handed alpha
Helix 64
AH1
E
2 9Right-handed alpha
Helix 65
AH2
E
10 30Right-handed alpha
Helix 66
AH3
E
35 61Right-handed alpha
Helix 67
AH4
E
62 71Right-handed alpha
Helix 68
AH5
E
84 138Right-handed alpha
Helix 69
AH6
E
143 169Right-handed alpha
Helix 70
AH7
E
183 194Right-handed alpha
Helix 71
AH8
E
194 202Right-handed alpha
Helix 72
AH9
E
217 236Right-handed alpha
Helix 73
AI1
E
264 268Right-handed 310
Helix 74
AI2
E
281 287Right-handed 310
Helix 75
AI3
E
290 300Right-handed alpha
Helix 76
AI4
E
324 328Right-handed 310
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There are 11 sheets in PDB entry 8G4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
511 512anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
457 459parallel
Strand 3
A
403 406anti-parallel
Strand 4
A
437 441parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
432 433anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 31first strand
Strand 2
B
2 13anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
69 70anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
164 168parallel
Strand 3
B
196 201parallel
Strand 4
B
35 39parallel
Strand 5
B
212 216parallel
Strand 6
B
221 226anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 31first strand
Strand 2
C
2 15anti-parallel
Strand 3
C
61 66anti-parallel
Strand 4
C
69 70anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
164 167parallel
Strand 3
C
196 201parallel
Strand 4
C
36 39parallel
Strand 5
C
212 216parallel
Strand 6
C
221 226anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 182first strand
Strand 2
D
213 216anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 209first strand
Strand 2
D
241 248parallel
Strand 3
D
251 257anti-parallel
Strand 4
D
315 322anti-parallel
Strand 5
D
305 311anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 182first strand
Strand 2
E
213 214anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 209first strand
Strand 2
E
241 248parallel
Strand 3
E
251 257anti-parallel
Strand 4
E
318 321anti-parallel
Strand 5
E
305 308anti-parallel
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