Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G4D entry

There are 5 chains in PDB entry 8G4D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 646
B	HIS 1	LEU 246
C	HIS 1	LEU 246
D	MET 1	VAL 334
E	MET 1	VAL 334

There are 75 helices in PDB entry 8G4D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	19	40	Right-handed alpha
Helix 3	AA3	A	43	47	Right-handed 310
Helix 4	AA4	A	54	82	Right-handed alpha
Helix 5	AA5	A	84	94	Right-handed alpha
Helix 6	AA6	A	96	127	Right-handed alpha
Helix 7	AA7	A	128	139	Right-handed alpha
Helix 8	AA8	A	149	177	Right-handed alpha
Helix 9	AA9	A	198	225	Right-handed alpha
Helix 10	AB1	A	229	232	Right-handed 310
Helix 11	AB2	A	233	252	Right-handed alpha
Helix 12	AB3	A	254	267	Right-handed alpha
Helix 13	AB4	A	272	286	Right-handed alpha
Helix 14	AB5	A	290	316	Right-handed alpha
Helix 15	AB6	A	317	325	Right-handed alpha
Helix 16	AB7	A	333	344	Right-handed alpha
Helix 17	AB8	A	365	369	Right-handed 310
Helix 18	AB9	A	409	414	Right-handed alpha
Helix 19	AC1	A	447	452	Right-handed alpha
Helix 20	AC2	A	461	472	Right-handed alpha
Helix 21	AC3	A	493	505	Right-handed alpha
Helix 22	AC4	A	513	556	Right-handed alpha
Helix 23	AC5	A	558	563	Right-handed alpha
Helix 24	AC6	A	571	602	Right-handed alpha
Helix 25	AC7	A	613	644	Right-handed alpha
Helix 26	AC8	B	15	19	Right-handed 310
Helix 27	AC9	B	46	54	Right-handed alpha
Helix 28	AD1	B	76	86	Right-handed alpha
Helix 29	AD2	B	101	108	Right-handed alpha
Helix 30	AD3	B	109	112	Right-handed 310
Helix 31	AD4	B	117	131	Right-handed alpha
Helix 32	AD5	B	145	160	Right-handed alpha
Helix 33	AD6	B	175	193	Right-handed alpha
Helix 34	AD7	B	203	208	Right-handed alpha
Helix 35	AD8	B	231	246	Right-handed alpha
Helix 36	AD9	C	46	54	Right-handed alpha
Helix 37	AE1	C	75	86	Right-handed alpha
Helix 38	AE2	C	101	108	Right-handed alpha
Helix 39	AE3	C	109	111	Right-handed 310
Helix 40	AE4	C	116	132	Right-handed alpha
Helix 41	AE5	C	133	139	Right-handed 310
Helix 42	AE6	C	145	157	Right-handed alpha
Helix 43	AE7	C	175	193	Right-handed alpha
Helix 44	AE8	C	203	208	Right-handed alpha
Helix 45	AE9	C	233	246	Right-handed alpha
Helix 46	AF1	D	2	9	Right-handed alpha
Helix 47	AF2	D	10	30	Right-handed alpha
Helix 48	AF3	D	35	72	Right-handed alpha
Helix 49	AF4	D	75	79	Right-handed 310
Helix 50	AF5	D	84	138	Right-handed alpha
Helix 51	AF6	D	143	169	Right-handed alpha
Helix 52	AF7	D	170	175	Right-handed 310
Helix 53	AF8	D	183	194	Right-handed alpha
Helix 54	AF9	D	194	202	Right-handed alpha
Helix 55	AG1	D	217	236	Right-handed alpha
Helix 56	AG2	D	264	273	Right-handed 310
Helix 57	AG3	D	281	285	Right-handed 310
Helix 58	AG4	D	289	303	Right-handed alpha
Helix 59	AG5	D	327	334	Right-handed alpha
Helix 60	AG6	E	2	9	Right-handed alpha
Helix 61	AG7	E	9	30	Right-handed alpha
Helix 62	AG8	E	34	37	Right-handed 310
Helix 63	AG9	E	38	61	Right-handed alpha
Helix 64	AH1	E	62	70	Right-handed alpha
Helix 65	AH2	E	75	79	Right-handed 310
Helix 66	AH3	E	86	138	Right-handed alpha
Helix 67	AH4	E	143	170	Right-handed alpha
Helix 68	AH5	E	171	175	Right-handed 310
Helix 69	AH6	E	183	193	Right-handed alpha
Helix 70	AH7	E	195	202	Right-handed alpha
Helix 71	AH8	E	218	236	Right-handed alpha
Helix 72	AH9	E	264	268	Right-handed 310
Helix 73	AI1	E	281	286	Right-handed 310
Helix 74	AI2	E	289	300	Right-handed alpha
Helix 75	AI3	E	329	334	Right-handed alpha

There are 13 sheets in PDB entry 8G4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	329	331	anti-parallel
Strand 4	A	511	512	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	386	388	anti-parallel
Strand 3	A	458	459	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	29	30	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	69	70	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	164	168	parallel
Strand 3	B	196	201	parallel
Strand 4	B	35	39	parallel
Strand 5	B	212	216	parallel
Strand 6	B	221	226	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	26	first strand
Strand 2	C	4	15	anti-parallel
Strand 3	C	61	66	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	213	215	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	196	198	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	182	first strand
Strand 2	D	213	216	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	242	244	parallel
Strand 3	D	252	257	anti-parallel
Strand 4	D	315	322	anti-parallel
Strand 5	D	305	311	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	182	first strand
Strand 2	E	213	215	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	209	first strand
Strand 2	E	241	248	parallel
Strand 3	E	251	257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	311	first strand
Strand 2	E	315	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G4D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4D