Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G4E entry

There are 3 chains in PDB entry 8G4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 155ALA 322
B
 MET 1LEU 64
B
 VAL 68HIS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8G4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 178Right-handed alpha
Helix 2
AA2
A
179 190Right-handed alpha
Helix 3
AA3
A
202 210Right-handed alpha
Helix 4
AA4
A
212 222Right-handed alpha
Helix 5
AA5
A
235 244Right-handed alpha
Helix 6
AA6
A
245 256Right-handed alpha
Helix 7
AA7
A
268 277Right-handed alpha
Helix 8
AA8
A
278 288Right-handed alpha
Helix 9
AA9
A
301 309Right-handed alpha
Helix 10
AB1
A
312 322Right-handed alpha
Helix 11
AB2
B
2 8Right-handed alpha
Helix 12
AB3
B
56 61Right-handed 310
Helix 13
AB4
B
68 72Right-handed 310
Helix 14
AB5
B
78 81Right-handed 310
Helix 15
AB6
B
82 87Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8G4E.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
149 154anti-parallel
Strand 7
B
161 171anti-parallel
Strand 8
B
175 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
11 22parallel
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