Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G4O entry

There are 9 chains in PDB entry 8G4O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	GLU 418
B	PRO 6	VAL 487
C	ASP 9	GLU 418
D	GLY 25	SER 432
E	PRO 6	ASN 488
H	GLU 1	SER 112
J	GLU 1	SER 112
K	TYR 1	ILE 105
L	TYR 1	ILE 105

There are 41 helices in PDB entry 8G4O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	222	229	Right-handed alpha
Helix 4	AA4	A	229	247	Right-handed alpha
Helix 5	AA5	A	250	276	Right-handed alpha
Helix 6	AA6	A	284	310	Right-handed alpha
Helix 7	AA7	A	389	417	Right-handed alpha
Helix 8	AA8	B	7	21	Right-handed alpha
Helix 9	AA9	B	84	91	Right-handed 310
Helix 10	AB1	B	170	173	Right-handed 310
Helix 11	AB2	B	217	225	Right-handed alpha
Helix 12	AB3	B	225	242	Right-handed alpha
Helix 13	AB4	B	246	269	Right-handed alpha
Helix 14	AB5	B	279	308	Right-handed alpha
Helix 15	AB6	B	459	487	Right-handed alpha
Helix 16	AB7	C	10	22	Right-handed alpha
Helix 17	AB8	C	86	92	Right-handed alpha
Helix 18	AB9	C	173	176	Right-handed 310
Helix 19	AC1	C	222	229	Right-handed alpha
Helix 20	AC2	C	229	246	Right-handed alpha
Helix 21	AC3	C	250	276	Right-handed alpha
Helix 22	AC4	C	283	310	Right-handed alpha
Helix 23	AC5	C	389	417	Right-handed alpha
Helix 24	AC6	D	26	36	Right-handed alpha
Helix 25	AC7	D	99	103	Right-handed 310
Helix 26	AC8	D	192	196	Right-handed 310
Helix 27	AC9	D	233	240	Right-handed alpha
Helix 28	AD1	D	240	257	Right-handed alpha
Helix 29	AD2	D	261	284	Right-handed alpha
Helix 30	AD3	D	294	319	Right-handed alpha
Helix 31	AD4	D	411	432	Right-handed alpha
Helix 32	AD5	E	7	21	Right-handed alpha
Helix 33	AD6	E	84	91	Right-handed 310
Helix 34	AD7	E	217	225	Right-handed alpha
Helix 35	AD8	E	225	241	Right-handed alpha
Helix 36	AD9	E	247	270	Right-handed alpha
Helix 37	AE1	E	278	308	Right-handed alpha
Helix 38	AE2	E	460	488	Right-handed alpha
Helix 39	AE3	H	61	64	Right-handed 310
Helix 40	AE4	J	28	32	Right-handed 310
Helix 41	AE5	L	79	83	Right-handed 310

There are 30 sheets in PDB entry 8G4O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	130	137	anti-parallel
Strand 3	A	58	69	anti-parallel
Strand 4	A	38	53	anti-parallel
Strand 5	A	166	170	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	130	137	anti-parallel
Strand 3	A	58	69	anti-parallel
Strand 4	A	38	53	anti-parallel
Strand 5	A	178	180	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	118	121	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	156	158	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	208	220	anti-parallel
Strand 3	A	190	203	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	124	134	anti-parallel
Strand 3	B	56	67	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	164	168	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	124	134	anti-parallel
Strand 3	B	56	67	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	116	120	anti-parallel
Strand 3	C	125	132	anti-parallel
Strand 4	C	62	70	anti-parallel
Strand 5	C	38	48	anti-parallel
Strand 6	C	166	170	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	116	120	anti-parallel
Strand 3	C	125	132	anti-parallel
Strand 4	C	62	70	anti-parallel
Strand 5	C	38	48	anti-parallel
Strand 6	C	178	180	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	58	59	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	156	158	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	207	220	anti-parallel
Strand 3	C	190	204	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	66	first strand
Strand 2	D	71	82	anti-parallel
Strand 3	D	142	150	anti-parallel
Strand 4	D	116	121	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	D	142	150	anti-parallel
Strand 4	D	71	82	anti-parallel
Strand 5	D	51	57	anti-parallel
Strand 6	D	179	188	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	169	171	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	219	231	anti-parallel
Strand 3	D	201	214	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	56	61	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	164	168	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	123	128	anti-parallel
Strand 3	E	64	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	149	156	anti-parallel
Strand 3	E	208	216	anti-parallel
Strand 4	E	186	194	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	204	206	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	92	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	56	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	66	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	101	104	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	48	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	102	103	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G4O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4O