Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G4U entry

There are 4 chains in PDB entry 8G4U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1486	LEU 2356
B	ASP 1486	LEU 2356
C	PRO 1487	PRO 2351
D	ASP 1486	LEU 2356

There are139 helices in PDB entry 8G4U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1503	1513	Right-handed alpha
Helix 2	AA2	A	1565	1571	Right-handed alpha
Helix 3	AA3	A	1573	1591	Right-handed alpha
Helix 4	AA4	A	1593	1598	Right-handed 310
Helix 5	AA5	A	1637	1645	Right-handed alpha
Helix 6	AA6	A	1659	1673	Right-handed alpha
Helix 7	AA7	A	1690	1699	Right-handed alpha
Helix 8	AA8	A	1732	1737	Right-handed alpha
Helix 9	AA9	A	1765	1780	Right-handed alpha
Helix 10	AB1	A	1798	1811	Right-handed alpha
Helix 11	AB2	A	1826	1831	Right-handed alpha
Helix 12	AB3	A	1833	1835	Right-handed 310
Helix 13	AB4	A	1836	1852	Right-handed alpha
Helix 14	AB5	A	1868	1872	Right-handed 310
Helix 15	AB6	A	1941	1956	Right-handed alpha
Helix 16	AB7	A	1961	1972	Right-handed alpha
Helix 17	AB8	A	1986	1999	Right-handed alpha
Helix 18	AB9	A	2032	2036	Right-handed 310
Helix 19	AC1	A	2037	2056	Right-handed alpha
Helix 20	AC2	A	2058	2065	Right-handed alpha
Helix 21	AC3	A	2074	2096	Right-handed alpha
Helix 22	AC4	A	2108	2117	Right-handed alpha
Helix 23	AC5	A	2121	2136	Right-handed alpha
Helix 24	AC6	A	2137	2140	Right-handed 310
Helix 25	AC7	A	2151	2159	Right-handed alpha
Helix 26	AC8	A	2160	2163	Right-handed 310
Helix 27	AC9	A	2182	2197	Right-handed alpha
Helix 28	AD1	A	2211	2216	Right-handed 310
Helix 29	AD2	A	2217	2225	Right-handed alpha
Helix 30	AD3	A	2252	2262	Right-handed alpha
Helix 31	AD4	A	2265	2276	Right-handed alpha
Helix 32	AD5	A	2290	2298	Right-handed alpha
Helix 33	AD6	A	2311	2326	Right-handed alpha
Helix 34	AD7	A	2331	2336	Right-handed alpha
Helix 35	AD8	B	1503	1509	Right-handed alpha
Helix 36	AD9	B	1558	1563	Right-handed alpha
Helix 37	AE1	B	1565	1571	Right-handed alpha
Helix 38	AE2	B	1573	1590	Right-handed alpha
Helix 39	AE3	B	1593	1598	Right-handed 310
Helix 40	AE4	B	1637	1644	Right-handed alpha
Helix 41	AE5	B	1659	1674	Right-handed alpha
Helix 42	AE6	B	1732	1738	Right-handed alpha
Helix 43	AE7	B	1765	1780	Right-handed alpha
Helix 44	AE8	B	1798	1811	Right-handed alpha
Helix 45	AE9	B	1815	1819	Right-handed 310
Helix 46	AF1	B	1826	1831	Right-handed alpha
Helix 47	AF2	B	1833	1835	Right-handed 310
Helix 48	AF3	B	1836	1852	Right-handed alpha
Helix 49	AF4	B	1868	1872	Right-handed 310
Helix 50	AF5	B	1941	1951	Right-handed alpha
Helix 51	AF6	B	1961	1972	Right-handed alpha
Helix 52	AF7	B	1986	1998	Right-handed alpha
Helix 53	AF8	B	2032	2036	Right-handed 310
Helix 54	AF9	B	2037	2056	Right-handed alpha
Helix 55	AG1	B	2058	2065	Right-handed alpha
Helix 56	AG2	B	2074	2096	Right-handed alpha
Helix 57	AG3	B	2108	2117	Right-handed alpha
Helix 58	AG4	B	2121	2136	Right-handed alpha
Helix 59	AG5	B	2137	2140	Right-handed 310
Helix 60	AG6	B	2151	2159	Right-handed alpha
Helix 61	AG7	B	2160	2163	Right-handed 310
Helix 62	AG8	B	2182	2196	Right-handed alpha
Helix 63	AG9	B	2211	2216	Right-handed 310
Helix 64	AH1	B	2217	2225	Right-handed alpha
Helix 65	AH2	B	2252	2262	Right-handed alpha
Helix 66	AH3	B	2266	2275	Right-handed alpha
Helix 67	AH4	B	2290	2298	Right-handed alpha
Helix 68	AH5	B	2311	2326	Right-handed alpha
Helix 69	AH6	B	2331	2336	Right-handed alpha
Helix 70	AH7	C	1503	1513	Right-handed alpha
Helix 71	AH8	C	1558	1563	Right-handed alpha
Helix 72	AH9	C	1565	1570	Right-handed alpha
Helix 73	AI1	C	1573	1591	Right-handed alpha
Helix 74	AI2	C	1593	1598	Right-handed 310
Helix 75	AI3	C	1637	1645	Right-handed alpha
Helix 76	AI4	C	1660	1674	Right-handed alpha
Helix 77	AI5	C	1732	1738	Right-handed alpha
Helix 78	AI6	C	1765	1780	Right-handed alpha
Helix 79	AI7	C	1798	1811	Right-handed alpha
Helix 80	AI8	C	1826	1831	Right-handed alpha
Helix 81	AI9	C	1833	1835	Right-handed 310
Helix 82	AJ1	C	1836	1852	Right-handed alpha
Helix 83	AJ2	C	1925	1929	Right-handed 310
Helix 84	AJ3	C	1941	1952	Right-handed alpha
Helix 85	AJ4	C	1962	1971	Right-handed alpha
Helix 86	AJ5	C	1986	1998	Right-handed alpha
Helix 87	AJ6	C	2032	2036	Right-handed 310
Helix 88	AJ7	C	2037	2056	Right-handed alpha
Helix 89	AJ8	C	2058	2064	Right-handed alpha
Helix 90	AJ9	C	2074	2096	Right-handed alpha
Helix 91	AK1	C	2108	2117	Right-handed alpha
Helix 92	AK2	C	2121	2137	Right-handed alpha
Helix 93	AK3	C	2138	2140	Right-handed 310
Helix 94	AK4	C	2151	2160	Right-handed alpha
Helix 95	AK5	C	2161	2163	Right-handed 310
Helix 96	AK6	C	2182	2197	Right-handed alpha
Helix 97	AK7	C	2211	2216	Right-handed 310
Helix 98	AK8	C	2217	2226	Right-handed alpha
Helix 99	AK9	C	2252	2262	Right-handed alpha
Helix 100	AL1	C	2265	2276	Right-handed alpha
Helix 101	AL2	C	2290	2298	Right-handed alpha
Helix 102	AL3	C	2311	2327	Right-handed alpha
Helix 103	AL4	C	2331	2336	Right-handed alpha
Helix 104	AL5	D	1503	1513	Right-handed alpha
Helix 105	AL6	D	1558	1563	Right-handed alpha
Helix 106	AL7	D	1565	1571	Right-handed alpha
Helix 107	AL8	D	1573	1591	Right-handed alpha
Helix 108	AL9	D	1593	1598	Right-handed 310
Helix 109	AM1	D	1633	1644	Right-handed alpha
Helix 110	AM2	D	1659	1673	Right-handed alpha
Helix 111	AM3	D	1690	1699	Right-handed alpha
Helix 112	AM4	D	1732	1738	Right-handed alpha
Helix 113	AM5	D	1765	1780	Right-handed alpha
Helix 114	AM6	D	1798	1809	Right-handed alpha
Helix 115	AM7	D	1815	1819	Right-handed 310
Helix 116	AM8	D	1826	1831	Right-handed alpha
Helix 117	AM9	D	1833	1835	Right-handed 310
Helix 118	AN1	D	1836	1851	Right-handed alpha
Helix 119	AN2	D	1868	1872	Right-handed 310
Helix 120	AN3	D	1941	1956	Right-handed alpha
Helix 121	AN4	D	1961	1972	Right-handed alpha
Helix 122	AN5	D	1986	1998	Right-handed alpha
Helix 123	AN6	D	2031	2036	Right-handed 310
Helix 124	AN7	D	2037	2056	Right-handed alpha
Helix 125	AN8	D	2058	2065	Right-handed alpha
Helix 126	AN9	D	2074	2096	Right-handed alpha
Helix 127	AO1	D	2108	2118	Right-handed alpha
Helix 128	AO2	D	2121	2136	Right-handed alpha
Helix 129	AO3	D	2137	2140	Right-handed 310
Helix 130	AO4	D	2151	2160	Right-handed alpha
Helix 131	AO5	D	2161	2163	Right-handed 310
Helix 132	AO6	D	2182	2197	Right-handed alpha
Helix 133	AO7	D	2211	2216	Right-handed 310
Helix 134	AO8	D	2217	2225	Right-handed alpha
Helix 135	AO9	D	2252	2262	Right-handed alpha
Helix 136	AP1	D	2266	2276	Right-handed alpha
Helix 137	AP2	D	2290	2298	Right-handed alpha
Helix 138	AP3	D	2311	2326	Right-handed alpha
Helix 139	AP4	D	2331	2336	Right-handed alpha

There are 23 sheets in PDB entry 8G4U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1650	1653	first strand
Strand 2	A	1602	1607	parallel
Strand 3	A	1678	1685	parallel
Strand 4	A	1723	1731	anti-parallel
Strand 5	A	1488	1496	anti-parallel
Strand 6	A	1744	1752	anti-parallel
Strand 7	A	1904	1910	anti-parallel
Strand 8	A	1892	1898	anti-parallel
Strand 9	A	1788	1790	parallel
Strand 10	A	1821	1824	parallel
Strand 11	A	1874	1876	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1520	first strand
Strand 2	A	1547	1548	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1556	1557	first strand
Strand 2	A	2352	2353	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1933	1939	first strand
Strand 2	A	1978	1984	anti-parallel
Strand 3	A	2006	2008	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2102	2105	first strand
Strand 2	A	2017	2020	parallel
Strand 3	A	2280	2283	parallel
Strand 4	A	2302	2305	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2166	2173	first strand
Strand 2	A	2176	2181	anti-parallel
Strand 3	A	2144	2148	anti-parallel
Strand 4	A	2200	2202	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2238	2239	first strand
Strand 2	A	2244	2245	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1650	1654	first strand
Strand 2	B	1603	1608	parallel
Strand 3	B	1679	1685	parallel
Strand 4	B	1723	1731	anti-parallel
Strand 5	B	1488	1496	anti-parallel
Strand 6	B	1744	1752	anti-parallel
Strand 7	B	1904	1910	anti-parallel
Strand 8	B	1892	1898	anti-parallel
Strand 9	B	1788	1790	parallel
Strand 10	B	1821	1824	parallel
Strand 11	B	1874	1876	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1556	1557	first strand
Strand 2	B	2352	2353	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1853	1854	first strand
Strand 2	B	1881	1882	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1933	1939	first strand
Strand 2	B	1978	1984	anti-parallel
Strand 3	B	2006	2008	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2244	2245	first strand
Strand 2	B	2237	2239	anti-parallel
Strand 3	B	2102	2105	parallel
Strand 4	B	2017	2020	parallel
Strand 5	B	2280	2283	parallel
Strand 6	B	2302	2305	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2200	2202	first strand
Strand 2	B	2144	2148	anti-parallel
Strand 3	B	2176	2181	anti-parallel
Strand 4	B	2166	2173	anti-parallel
Strand 5	B	2264	2265	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1650	1651	first strand
Strand 2	C	1602	1607	parallel
Strand 3	C	1678	1685	parallel
Strand 4	C	1723	1731	anti-parallel
Strand 5	C	1488	1496	anti-parallel
Strand 6	C	1744	1752	anti-parallel
Strand 7	C	1904	1910	anti-parallel
Strand 8	C	1893	1898	anti-parallel
Strand 9	C	1788	1790	parallel
Strand 10	C	1821	1824	parallel
Strand 11	C	1874	1876	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1933	1936	first strand
Strand 2	C	1980	1984	anti-parallel
Strand 3	C	2007	2008	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2102	2105	first strand
Strand 2	C	2017	2020	parallel
Strand 3	C	2280	2283	parallel
Strand 4	C	2302	2304	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2166	2173	first strand
Strand 2	C	2176	2181	anti-parallel
Strand 3	C	2144	2148	anti-parallel
Strand 4	C	2200	2202	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2237	2238	first strand
Strand 2	C	2245	2246	anti-parallel

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There are 11 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1650	1654	first strand
Strand 2	D	1602	1608	parallel
Strand 3	D	1678	1685	parallel
Strand 4	D	1723	1731	anti-parallel
Strand 5	D	1488	1496	anti-parallel
Strand 6	D	1744	1753	anti-parallel
Strand 7	D	1903	1910	anti-parallel
Strand 8	D	1892	1898	anti-parallel
Strand 9	D	1786	1790	parallel
Strand 10	D	1821	1824	parallel
Strand 11	D	1874	1876	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1853	1854	first strand
Strand 2	D	1881	1882	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1933	1939	first strand
Strand 2	D	1978	1984	anti-parallel
Strand 3	D	2006	2007	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2245	2246	first strand
Strand 2	D	2237	2238	anti-parallel
Strand 3	D	2102	2105	parallel
Strand 4	D	2017	2020	parallel
Strand 5	D	2280	2283	parallel
Strand 6	D	2302	2304	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2200	2202	first strand
Strand 2	D	2144	2148	anti-parallel
Strand 3	D	2176	2181	anti-parallel
Strand 4	D	2166	2173	anti-parallel
Strand 5	D	2264	2265	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G4U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G4U