Analysis of interatomic Contacts of Structural Units in PDB entry:
8G57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G57 entry

There are 11 chains in PDB entry 8G57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ASP 14	PRO 293
A	THR 3	ARG 134
B	HIS 18	GLY 102
C	ALA 10	THR 120
D	LYS 30	LYS 125
E	LYS 36	ARG 134
F	ARG 19	GLY 102
G	ARG 11	GLY 128
H	ARG 28	LYS 122
I	T 22	T 171
J	A 1	A 150

There are 45 helices in PDB entry 8G57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	27	43	Right-handed alpha
Helix 2	AA2	K	53	60	Right-handed 310
Helix 3	AA3	K	71	76	Right-handed alpha
Helix 4	AA4	K	82	87	Right-handed alpha
Helix 5	AA5	K	92	105	Right-handed alpha
Helix 6	AA6	K	117	122	Right-handed alpha
Helix 7	AA7	K	125	127	Right-handed 310
Helix 8	AA8	K	193	206	Right-handed alpha
Helix 9	AA9	K	223	232	Right-handed alpha
Helix 10	AB1	K	257	270	Right-handed alpha
Helix 11	AB2	A	45	56	Right-handed alpha
Helix 12	AB3	A	63	76	Right-handed alpha
Helix 13	AB4	A	85	114	Right-handed alpha
Helix 14	AB5	A	120	132	Right-handed alpha
Helix 15	AB6	B	25	29	Right-handed 310
Helix 16	AB7	B	30	42	Right-handed alpha
Helix 17	AB8	B	49	74	Right-handed alpha
Helix 18	AB9	B	82	93	Right-handed alpha
Helix 19	AC1	C	16	22	Right-handed alpha
Helix 20	AC2	C	26	36	Right-handed alpha
Helix 21	AC3	C	46	73	Right-handed alpha
Helix 22	AC4	C	79	90	Right-handed alpha
Helix 23	AC5	C	92	97	Right-handed alpha
Helix 24	AC6	C	112	116	Right-handed 310
Helix 25	AC7	D	37	49	Right-handed alpha
Helix 26	AC8	D	55	84	Right-handed alpha
Helix 27	AC9	D	90	102	Right-handed alpha
Helix 28	AD1	D	103	125	Right-handed alpha
Helix 29	AD2	E	44	56	Right-handed alpha
Helix 30	AD3	E	63	76	Right-handed alpha
Helix 31	AD4	E	85	114	Right-handed alpha
Helix 32	AD5	E	120	132	Right-handed alpha
Helix 33	AD6	F	25	29	Right-handed 310
Helix 34	AD7	F	30	42	Right-handed alpha
Helix 35	AD8	F	49	76	Right-handed alpha
Helix 36	AD9	F	82	93	Right-handed alpha
Helix 37	AE1	G	16	22	Right-handed alpha
Helix 38	AE2	G	26	36	Right-handed alpha
Helix 39	AE3	G	46	73	Right-handed alpha
Helix 40	AE4	G	79	90	Right-handed alpha
Helix 41	AE5	G	90	97	Right-handed alpha
Helix 42	AE6	H	35	46	Right-handed alpha
Helix 43	AE7	H	52	80	Right-handed alpha
Helix 44	AE8	H	87	99	Right-handed alpha
Helix 45	AE9	H	101	121	Right-handed alpha

There are 11 sheets in PDB entry 8G57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	131	first strand
Strand 2	K	109	112	parallel
Strand 3	K	47	51	parallel
Strand 4	K	209	213	parallel
Strand 5	K	237	239	parallel
Strand 6	K	252	254	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	149	first strand
Strand 2	K	138	140	anti-parallel
Strand 3	K	180	183	anti-parallel
Strand 4	K	161	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G57

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G57