Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G5D entry

There are 4 chains in PDB entry 8G5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 821	MET 1099
B	VAL 821	MET 1099
C	VAL 821	MET 1099
D	SER 2	MET 1099

There are 85 helices in PDB entry 8G5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	825	831	Right-handed alpha
Helix 2	AA2	A	859	865	Right-handed alpha
Helix 3	AA3	A	868	879	Right-handed alpha
Helix 4	AA4	A	883	897	Right-handed alpha
Helix 5	AA5	A	904	916	Right-handed alpha
Helix 6	AA6	A	919	929	Right-handed alpha
Helix 7	AA7	A	937	953	Right-handed alpha
Helix 8	AA8	A	955	966	Right-handed alpha
Helix 9	AA9	A	986	998	Right-handed alpha
Helix 10	AB1	A	1001	1016	Right-handed alpha
Helix 11	AB2	A	1024	1040	Right-handed alpha
Helix 12	AB3	A	1044	1055	Right-handed alpha
Helix 13	AB4	A	1055	1080	Right-handed alpha
Helix 14	AB5	A	1087	1089	Right-handed 310
Helix 15	AB6	B	825	831	Right-handed alpha
Helix 16	AB7	B	859	865	Right-handed alpha
Helix 17	AB8	B	868	879	Right-handed alpha
Helix 18	AB9	B	883	897	Right-handed alpha
Helix 19	AC1	B	904	916	Right-handed alpha
Helix 20	AC2	B	919	929	Right-handed alpha
Helix 21	AC3	B	937	953	Right-handed alpha
Helix 22	AC4	B	955	966	Right-handed alpha
Helix 23	AC5	B	986	998	Right-handed alpha
Helix 24	AC6	B	1001	1016	Right-handed alpha
Helix 25	AC7	B	1024	1040	Right-handed alpha
Helix 26	AC8	B	1044	1055	Right-handed alpha
Helix 27	AC9	B	1055	1080	Right-handed alpha
Helix 28	AD1	B	1087	1089	Right-handed 310
Helix 29	AD2	C	825	831	Right-handed alpha
Helix 30	AD3	C	859	865	Right-handed alpha
Helix 31	AD4	C	868	879	Right-handed alpha
Helix 32	AD5	C	883	897	Right-handed alpha
Helix 33	AD6	C	904	916	Right-handed alpha
Helix 34	AD7	C	919	929	Right-handed alpha
Helix 35	AD8	C	937	953	Right-handed alpha
Helix 36	AD9	C	955	966	Right-handed alpha
Helix 37	AE1	C	986	998	Right-handed alpha
Helix 38	AE2	C	1001	1018	Right-handed alpha
Helix 39	AE3	C	1024	1040	Right-handed alpha
Helix 40	AE4	C	1044	1055	Right-handed alpha
Helix 41	AE5	C	1055	1080	Right-handed alpha
Helix 42	AE6	C	1087	1089	Right-handed 310
Helix 43	AE7	D	7	19	Right-handed alpha
Helix 44	AE8	D	39	47	Right-handed alpha
Helix 45	AE9	D	48	53	Right-handed alpha
Helix 46	AF1	D	77	86	Right-handed alpha
Helix 47	AF2	D	114	118	Right-handed 310
Helix 48	AF3	D	138	143	Right-handed 310
Helix 49	AF4	D	164	169	Right-handed alpha
Helix 50	AF5	D	174	176	Right-handed 310
Helix 51	AF6	D	177	195	Right-handed alpha
Helix 52	AF7	D	224	228	Right-handed 310
Helix 53	AF8	D	247	259	Right-handed alpha
Helix 54	AF9	D	281	295	Right-handed alpha
Helix 55	AG1	D	312	328	Right-handed alpha
Helix 56	AG2	D	349	364	Right-handed alpha
Helix 57	AG3	D	364	371	Right-handed alpha
Helix 58	AG4	D	383	398	Right-handed alpha
Helix 59	AG5	D	413	419	Right-handed alpha
Helix 60	AG6	D	505	519	Right-handed alpha
Helix 61	AG7	D	555	563	Right-handed alpha
Helix 62	AG8	D	574	586	Right-handed alpha
Helix 63	AG9	D	602	617	Right-handed alpha
Helix 64	AH1	D	642	649	Right-handed alpha
Helix 65	AH2	D	664	678	Right-handed alpha
Helix 66	AH3	D	696	707	Right-handed alpha
Helix 67	AH4	D	723	733	Right-handed alpha
Helix 68	AH5	D	746	751	Right-handed 310
Helix 69	AH6	D	771	783	Right-handed alpha
Helix 70	AH7	D	789	791	Right-handed 310
Helix 71	AH8	D	792	806	Right-handed alpha
Helix 72	AH9	D	825	831	Right-handed alpha
Helix 73	AI1	D	859	865	Right-handed alpha
Helix 74	AI2	D	868	879	Right-handed alpha
Helix 75	AI3	D	883	897	Right-handed alpha
Helix 76	AI4	D	904	916	Right-handed alpha
Helix 77	AI5	D	919	929	Right-handed alpha
Helix 78	AI6	D	937	953	Right-handed alpha
Helix 79	AI7	D	955	966	Right-handed alpha
Helix 80	AI8	D	986	998	Right-handed alpha
Helix 81	AI9	D	1001	1018	Right-handed alpha
Helix 82	AJ1	D	1024	1040	Right-handed alpha
Helix 83	AJ2	D	1044	1055	Right-handed alpha
Helix 84	AJ3	D	1055	1080	Right-handed alpha
Helix 85	AJ4	D	1087	1089	Right-handed 310

There are 20 sheets in PDB entry 8G5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	824	first strand
Strand 2	B	834	835	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	835	first strand
Strand 2	B	823	824	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	840	842	first strand
Strand 2	D	1091	1093	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	845	846	first strand
Strand 2	A	853	854	anti-parallel
Strand 3	A	857	858	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1093	first strand
Strand 2	D	840	842	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	840	842	first strand
Strand 2	C	1091	1093	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	853	854	anti-parallel
Strand 3	B	857	858	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1091	1093	first strand
Strand 2	C	840	842	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	824	first strand
Strand 2	D	834	835	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	835	first strand
Strand 2	D	823	824	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	845	846	first strand
Strand 2	C	853	854	anti-parallel
Strand 3	C	857	858	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	217	222	anti-parallel
Strand 3	D	197	207	anti-parallel
Strand 4	D	119	125	anti-parallel
Strand 5	D	129	135	anti-parallel
Strand 6	D	150	155	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	217	222	anti-parallel
Strand 3	D	197	207	anti-parallel
Strand 4	D	212	214	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	105	109	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	73	76	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	98	100	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	303	308	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	336	340	parallel
Strand 3	D	373	378	parallel
Strand 4	D	402	405	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	543	first strand
Strand 2	D	546	553	anti-parallel
Strand 3	D	526	530	parallel
Strand 4	D	499	502	parallel
Strand 5	D	568	571	parallel
Strand 6	D	593	596	parallel
Strand 7	D	619	621	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	635	first strand
Strand 2	D	628	630	anti-parallel
Strand 3	D	681	686	anti-parallel
Strand 4	D	657	661	parallel
Strand 5	D	712	717	parallel
Strand 6	D	740	744	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	845	846	first strand
Strand 2	D	853	854	anti-parallel
Strand 3	D	857	858	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5D