Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5J entry

There are 5 chains in PDB entry 8G5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 74LYS 1228
B
 ALA 68VAL 485
C
 GLU 67VAL 485
P
 A 10 DA 28
T
 C 2 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8G5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 109Right-handed alpha
Helix 2
AA2
A
134 159Right-handed alpha
Helix 3
AA3
A
180 182Right-handed 310
Helix 4
AA4
A
271 276Right-handed alpha
Helix 5
AA5
A
277 283Right-handed 310
Helix 6
AA6
A
294 303Right-handed alpha
Helix 7
AA7
A
305 316Right-handed alpha
Helix 8
AA8
A
355 364Right-handed alpha
Helix 9
AA9
A
381 388Right-handed alpha
Helix 10
AB1
A
388 418Right-handed alpha
Helix 11
AB2
A
420 431Right-handed alpha
Helix 12
AB3
A
439 471Right-handed alpha
Helix 13
AB4
A
472 475Right-handed 310
Helix 14
AB5
A
537 548Right-handed alpha
Helix 15
AB6
A
551 556Right-handed alpha
Helix 16
AB7
A
570 577Right-handed alpha
Helix 17
AB8
A
597 604Right-handed alpha
Helix 18
AB9
A
770 777Right-handed alpha
Helix 19
AC1
A
786 810Right-handed alpha
Helix 20
AC2
A
822 827Right-handed alpha
Helix 21
AC3
A
849 853Right-handed 310
Helix 22
AC4
A
874 878Right-handed 310
Helix 23
AC5
A
893 901Right-handed alpha
Helix 24
AC6
A
903 908Right-handed alpha
Helix 25
AC7
A
914 922Right-handed alpha
Helix 26
AC8
A
930 939Right-handed alpha
Helix 27
AC9
A
942 954Right-handed alpha
Helix 28
AD1
A
958 971Right-handed alpha
Helix 29
AD2
A
973 984Right-handed alpha
Helix 30
AD3
A
985 988Right-handed 310
Helix 31
AD4
A
1057 1066Right-handed alpha
Helix 32
AD5
A
1092 1124Right-handed alpha
Helix 33
AD6
A
1145 1168Right-handed alpha
Helix 34
AD7
A
1216 1221Right-handed 310
Helix 35
AD8
B
70 77Right-handed alpha
Helix 36
AD9
B
87 94Right-handed alpha
Helix 37
AE1
B
100 119Right-handed alpha
Helix 38
AE2
B
185 192Right-handed alpha
Helix 39
AE3
B
192 200Right-handed alpha
Helix 40
AE4
B
247 265Right-handed alpha
Helix 41
AE5
B
269 271Right-handed 310
Helix 42
AE6
B
308 315Right-handed alpha
Helix 43
AE7
B
319 323Right-handed 310
Helix 44
AE8
B
342 354Right-handed alpha
Helix 45
AE9
B
394 409Right-handed alpha
Helix 46
AF1
B
425 435Right-handed alpha
Helix 47
AF2
B
444 448Right-handed 310
Helix 48
AF3
B
470 485Right-handed alpha
Helix 49
AF4
C
68 76Right-handed alpha
Helix 50
AF5
C
88 93Right-handed alpha
Helix 51
AF6
C
100 119Right-handed alpha
Helix 52
AF7
C
185 192Right-handed alpha
Helix 53
AF8
C
192 200Right-handed alpha
Helix 54
AF9
C
244 246Right-handed 310
Helix 55
AG1
C
247 266Right-handed alpha
Helix 56
AG2
C
269 271Right-handed 310
Helix 57
AG3
C
308 315Right-handed alpha
Helix 58
AG4
C
318 323Right-handed alpha
Helix 59
AG5
C
342 354Right-handed alpha
Helix 60
AG6
C
391 409Right-handed alpha
Helix 61
AG7
C
424 435Right-handed alpha
Helix 62
AG8
C
444 451Right-handed alpha
Helix 63
AG9
C
469 484Right-handed alpha
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There are 10 sheets in PDB entry 8G5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
264 268parallel
Strand 7
A
289 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 816anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1133first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 889anti-parallel
Strand 4
A
1184 1186anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 306anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
330 331anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
207 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
297 306anti-parallel
Strand 6
C
286 292anti-parallel
Strand 7
C
273 278anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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