Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5K entry

There are 5 chains in PDB entry 8G5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 78THR 1227
B
 ALA 68VAL 485
C
 ALA 68VAL 485
P
 A 10 DA 27
T
 G 4 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8G5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 109Right-handed alpha
Helix 2
AA2
A
134 146Right-handed alpha
Helix 3
AA3
A
147 160Right-handed alpha
Helix 4
AA4
A
223 227Right-handed 310
Helix 5
AA5
A
270 276Right-handed alpha
Helix 6
AA6
A
294 301Right-handed alpha
Helix 7
AA7
A
305 315Right-handed alpha
Helix 8
AA8
A
345 351Right-handed alpha
Helix 9
AA9
A
358 364Right-handed alpha
Helix 10
AB1
A
375 380Right-handed alpha
Helix 11
AB2
A
381 387Right-handed alpha
Helix 12
AB3
A
388 418Right-handed alpha
Helix 13
AB4
A
420 432Right-handed alpha
Helix 14
AB5
A
440 472Right-handed alpha
Helix 15
AB6
A
542 552Right-handed alpha
Helix 16
AB7
A
570 576Right-handed alpha
Helix 17
AB8
A
793 809Right-handed alpha
Helix 18
AB9
A
894 904Right-handed alpha
Helix 19
AC1
A
914 919Right-handed alpha
Helix 20
AC2
A
933 940Right-handed alpha
Helix 21
AC3
A
945 955Right-handed alpha
Helix 22
AC4
A
958 968Right-handed alpha
Helix 23
AC5
A
973 980Right-handed alpha
Helix 24
AC6
A
982 989Right-handed alpha
Helix 25
AC7
A
1058 1067Right-handed alpha
Helix 26
AC8
A
1093 1115Right-handed alpha
Helix 27
AC9
A
1145 1169Right-handed alpha
Helix 28
AD1
B
69 77Right-handed alpha
Helix 29
AD2
B
100 105Right-handed alpha
Helix 30
AD3
B
112 119Right-handed alpha
Helix 31
AD4
B
186 192Right-handed alpha
Helix 32
AD5
B
192 197Right-handed alpha
Helix 33
AD6
B
249 265Right-handed alpha
Helix 34
AD7
B
269 271Right-handed 310
Helix 35
AD8
B
281 283Right-handed 310
Helix 36
AD9
B
308 315Right-handed alpha
Helix 37
AE1
B
319 323Right-handed 310
Helix 38
AE2
B
342 353Right-handed alpha
Helix 39
AE3
B
394 407Right-handed alpha
Helix 40
AE4
B
424 435Right-handed alpha
Helix 41
AE5
B
445 450Right-handed alpha
Helix 42
AE6
B
470 485Right-handed alpha
Helix 43
AE7
C
100 120Right-handed alpha
Helix 44
AE8
C
185 192Right-handed alpha
Helix 45
AE9
C
192 200Right-handed alpha
Helix 46
AF1
C
247 266Right-handed alpha
Helix 47
AF2
C
308 315Right-handed alpha
Helix 48
AF3
C
345 350Right-handed alpha
Helix 49
AF4
C
396 401Right-handed alpha
Helix 50
AF5
C
402 406Right-handed 310
Helix 51
AF6
C
415 419Right-handed 310
Helix 52
AF7
C
427 435Right-handed alpha
Helix 53
AF8
C
479 485Right-handed alpha
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There are 9 sheets in PDB entry 8G5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 215first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
265 268parallel
Strand 4
A
290 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
838 840anti-parallel
Strand 3
A
814 815anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1132first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1184 1186anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
208 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
297 305anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
207 211parallel
Strand 3
C
236 239anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
242 243anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
207 211parallel
Strand 3
C
236 239anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 305anti-parallel
Strand 6
C
288 293anti-parallel
Strand 7
C
273 276anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 326first strand
Strand 2
C
329 330anti-parallel
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