Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5L entry

There are 5 chains in PDB entry 8G5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 78LEU 1226
B
 ALA 68VAL 485
C
 GLU 67VAL 485
P
 G 10 DA 29
T
 C 3 C 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8G5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 109Right-handed alpha
Helix 2
AA2
A
134 159Right-handed alpha
Helix 3
AA3
A
179 183Right-handed 310
Helix 4
AA4
A
294 301Right-handed alpha
Helix 5
AA5
A
305 316Right-handed alpha
Helix 6
AA6
A
346 350Right-handed 310
Helix 7
AA7
A
355 364Right-handed alpha
Helix 8
AA8
A
381 388Right-handed alpha
Helix 9
AA9
A
388 418Right-handed alpha
Helix 10
AB1
A
420 429Right-handed alpha
Helix 11
AB2
A
438 472Right-handed alpha
Helix 12
AB3
A
473 477Right-handed 310
Helix 13
AB4
A
542 549Right-handed alpha
Helix 14
AB5
A
570 577Right-handed alpha
Helix 15
AB6
A
598 602Right-handed 310
Helix 16
AB7
A
788 809Right-handed alpha
Helix 17
AB8
A
893 907Right-handed alpha
Helix 18
AB9
A
914 923Right-handed alpha
Helix 19
AC1
A
935 940Right-handed alpha
Helix 20
AC2
A
945 954Right-handed alpha
Helix 21
AC3
A
958 970Right-handed alpha
Helix 22
AC4
A
973 986Right-handed alpha
Helix 23
AC5
A
1058 1066Right-handed alpha
Helix 24
AC6
A
1093 1123Right-handed alpha
Helix 25
AC7
A
1145 1169Right-handed alpha
Helix 26
AC8
A
1174 1179Right-handed alpha
Helix 27
AC9
A
1202 1206Right-handed 310
Helix 28
AD1
B
70 77Right-handed alpha
Helix 29
AD2
B
87 93Right-handed alpha
Helix 30
AD3
B
100 119Right-handed alpha
Helix 31
AD4
B
185 192Right-handed alpha
Helix 32
AD5
B
192 200Right-handed alpha
Helix 33
AD6
B
244 265Right-handed alpha
Helix 34
AD7
B
308 315Right-handed alpha
Helix 35
AD8
B
342 354Right-handed alpha
Helix 36
AD9
B
394 408Right-handed alpha
Helix 37
AE1
B
424 435Right-handed alpha
Helix 38
AE2
B
444 448Right-handed 310
Helix 39
AE3
B
470 485Right-handed alpha
Helix 40
AE4
C
68 76Right-handed alpha
Helix 41
AE5
C
87 93Right-handed alpha
Helix 42
AE6
C
100 119Right-handed alpha
Helix 43
AE7
C
185 200Right-handed alpha
Helix 44
AE8
C
244 246Right-handed 310
Helix 45
AE9
C
247 264Right-handed alpha
Helix 46
AF1
C
269 271Right-handed 310
Helix 47
AF2
C
308 315Right-handed alpha
Helix 48
AF3
C
318 323Right-handed alpha
Helix 49
AF4
C
342 354Right-handed alpha
Helix 50
AF5
C
391 410Right-handed alpha
Helix 51
AF6
C
424 435Right-handed alpha
Helix 52
AF7
C
444 451Right-handed alpha
Helix 53
AF8
C
468 484Right-handed alpha
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There are 10 sheets in PDB entry 8G5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
198 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
290 293parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
838 840anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1136 1138first strand
Strand 2
A
886 890anti-parallel
Strand 3
A
1184 1186anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
297 306anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
330 331anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
453 457anti-parallel
Strand 5
B
463 466anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
207 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
297 306anti-parallel
Strand 6
C
286 292anti-parallel
Strand 7
C
273 278anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 414first strand
Strand 2
C
381 387parallel
Strand 3
C
437 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
462 467anti-parallel
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