Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5M entry

There are 5 chains in PDB entry 8G5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 79LYS 1228
B
 GLU 64VAL 485
C
 SER 66VAL 485
R
 A 5 G 26
T
 G 3 T 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8G5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 110Right-handed alpha
Helix 2
AA2
A
135 159Right-handed alpha
Helix 3
AA3
A
180 182Right-handed 310
Helix 4
AA4
A
226 229Right-handed 310
Helix 5
AA5
A
271 276Right-handed alpha
Helix 6
AA6
A
277 278Right-handed 310
Helix 7
AA7
A
279 283Right-handed 310
Helix 8
AA8
A
294 301Right-handed alpha
Helix 9
AA9
A
305 317Right-handed alpha
Helix 10
AB1
A
345 350Right-handed 310
Helix 11
AB2
A
355 364Right-handed alpha
Helix 12
AB3
A
375 380Right-handed alpha
Helix 13
AB4
A
381 388Right-handed alpha
Helix 14
AB5
A
388 418Right-handed alpha
Helix 15
AB6
A
420 431Right-handed alpha
Helix 16
AB7
A
439 472Right-handed alpha
Helix 17
AB8
A
472 477Right-handed alpha
Helix 18
AB9
A
540 552Right-handed alpha
Helix 19
AC1
A
553 558Right-handed alpha
Helix 20
AC2
A
572 577Right-handed alpha
Helix 21
AC3
A
791 803Right-handed alpha
Helix 22
AC4
A
869 874Right-handed 310
Helix 23
AC5
A
893 908Right-handed alpha
Helix 24
AC6
A
916 922Right-handed alpha
Helix 25
AC7
A
946 956Right-handed alpha
Helix 26
AC8
A
958 969Right-handed alpha
Helix 27
AC9
A
1058 1066Right-handed alpha
Helix 28
AD1
A
1092 1123Right-handed alpha
Helix 29
AD2
A
1145 1152Right-handed alpha
Helix 30
AD3
A
1154 1167Right-handed alpha
Helix 31
AD4
A
1202 1206Right-handed 310
Helix 32
AD5
B
87 94Right-handed alpha
Helix 33
AD6
B
100 119Right-handed alpha
Helix 34
AD7
B
185 197Right-handed alpha
Helix 35
AD8
B
198 201Right-handed 310
Helix 36
AD9
B
247 265Right-handed alpha
Helix 37
AE1
B
269 271Right-handed 310
Helix 38
AE2
B
308 315Right-handed alpha
Helix 39
AE3
B
342 354Right-handed alpha
Helix 40
AE4
B
392 397Right-handed 310
Helix 41
AE5
B
398 408Right-handed alpha
Helix 42
AE6
B
424 435Right-handed alpha
Helix 43
AE7
B
444 448Right-handed 310
Helix 44
AE8
B
470 484Right-handed alpha
Helix 45
AE9
C
69 75Right-handed alpha
Helix 46
AF1
C
76 78Right-handed 310
Helix 47
AF2
C
100 119Right-handed alpha
Helix 48
AF3
C
185 200Right-handed alpha
Helix 49
AF4
C
247 266Right-handed alpha
Helix 50
AF5
C
269 273Right-handed 310
Helix 51
AF6
C
308 314Right-handed alpha
Helix 52
AF7
C
342 354Right-handed alpha
Helix 53
AF8
C
395 409Right-handed alpha
Helix 54
AF9
C
417 419Right-handed 310
Helix 55
AG1
C
424 435Right-handed alpha
Helix 56
AG2
C
445 451Right-handed alpha
Helix 57
AG3
C
470 484Right-handed alpha
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There are 10 sheets in PDB entry 8G5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
264 268parallel
Strand 7
A
289 293parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 815first strand
Strand 2
A
838 840anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 889first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
1130 1133anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
297 305anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
381 387parallel
Strand 3
B
437 443parallel
Strand 4
B
454 457anti-parallel
Strand 5
B
463 464anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 217parallel
Strand 3
C
231 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
301 305anti-parallel
Strand 6
C
285 289anti-parallel
Strand 7
C
275 279anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 388parallel
Strand 3
C
439 444parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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