Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5P entry

There are 5 chains in PDB entry 8G5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 78GLU 1232
B
 GLU 64VAL 485
C
 SER 66VAL 485
R
 G 6 G 22
T
 T 5 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8G5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 109Right-handed alpha
Helix 2
AA2
A
134 160Right-handed alpha
Helix 3
AA3
A
270 277Right-handed alpha
Helix 4
AA4
A
294 301Right-handed alpha
Helix 5
AA5
A
305 315Right-handed alpha
Helix 6
AA6
A
355 364Right-handed alpha
Helix 7
AA7
A
381 388Right-handed alpha
Helix 8
AA8
A
388 418Right-handed alpha
Helix 9
AA9
A
421 431Right-handed alpha
Helix 10
AB1
A
440 470Right-handed alpha
Helix 11
AB2
A
471 475Right-handed 310
Helix 12
AB3
A
536 541Right-handed alpha
Helix 13
AB4
A
570 577Right-handed alpha
Helix 14
AB5
A
598 603Right-handed alpha
Helix 15
AB6
A
788 809Right-handed alpha
Helix 16
AB7
A
893 908Right-handed alpha
Helix 17
AB8
A
915 923Right-handed alpha
Helix 18
AB9
A
934 940Right-handed alpha
Helix 19
AC1
A
945 955Right-handed alpha
Helix 20
AC2
A
958 970Right-handed alpha
Helix 21
AC3
A
973 977Right-handed 310
Helix 22
AC4
A
982 987Right-handed alpha
Helix 23
AC5
A
1058 1066Right-handed alpha
Helix 24
AC6
A
1080 1084Right-handed 310
Helix 25
AC7
A
1092 1123Right-handed alpha
Helix 26
AC8
A
1145 1167Right-handed alpha
Helix 27
AC9
A
1175 1179Right-handed 310
Helix 28
AD1
A
1202 1206Right-handed 310
Helix 29
AD2
A
1217 1221Right-handed 310
Helix 30
AD3
A
1226 1230Right-handed 310
Helix 31
AD4
B
87 94Right-handed alpha
Helix 32
AD5
B
100 119Right-handed alpha
Helix 33
AD6
B
185 193Right-handed alpha
Helix 34
AD7
B
194 201Right-handed 310
Helix 35
AD8
B
247 265Right-handed alpha
Helix 36
AD9
B
269 271Right-handed 310
Helix 37
AE1
B
308 315Right-handed alpha
Helix 38
AE2
B
342 354Right-handed alpha
Helix 39
AE3
B
393 397Right-handed 310
Helix 40
AE4
B
398 408Right-handed alpha
Helix 41
AE5
B
424 435Right-handed alpha
Helix 42
AE6
B
444 448Right-handed 310
Helix 43
AE7
B
470 484Right-handed alpha
Helix 44
AE8
C
68 75Right-handed alpha
Helix 45
AE9
C
76 78Right-handed 310
Helix 46
AF1
C
100 119Right-handed alpha
Helix 47
AF2
C
185 201Right-handed alpha
Helix 48
AF3
C
247 266Right-handed alpha
Helix 49
AF4
C
269 273Right-handed 310
Helix 50
AF5
C
308 314Right-handed alpha
Helix 51
AF6
C
342 354Right-handed alpha
Helix 52
AF7
C
395 409Right-handed alpha
Helix 53
AF8
C
424 435Right-handed alpha
Helix 54
AF9
C
444 451Right-handed alpha
Helix 55
AG1
C
470 484Right-handed alpha
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There are 10 sheets in PDB entry 8G5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
220 223anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
265 268parallel
Strand 7
A
290 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
838 840anti-parallel
Strand 3
A
813 815anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1132first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1184 1186anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
297 305anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
381 387parallel
Strand 3
B
437 443parallel
Strand 4
B
454 457anti-parallel
Strand 5
B
463 464anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 217parallel
Strand 3
C
231 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
301 304anti-parallel
Strand 6
C
286 289anti-parallel
Strand 7
C
276 278anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
381 387parallel
Strand 3
C
437 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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