Analysis of interatomic Contacts of Structural Units in PDB entry:
8G5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G5S entry

There are 2 chains in PDB entry 8G5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9PRO 369
B
 GLY 7PRO 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8G5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 40Right-handed alpha
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
63 77Right-handed alpha
Helix 5
AA5
A
101 109Right-handed alpha
Helix 6
AA6
A
117 121Right-handed 310
Helix 7
AA7
A
122 129Right-handed alpha
Helix 8
AA8
A
130 141Right-handed alpha
Helix 9
AA9
A
145 149Right-handed 310
Helix 10
AB1
A
150 169Right-handed alpha
Helix 11
AB2
A
172 177Right-handed alpha
Helix 12
AB3
A
179 187Right-handed alpha
Helix 13
AB4
A
198 208Right-handed alpha
Helix 14
AB5
A
219 233Right-handed alpha
Helix 15
AB6
A
245 250Right-handed alpha
Helix 16
AB7
A
264 268Right-handed 310
Helix 17
AB8
A
270 281Right-handed alpha
Helix 18
AB9
A
298 302Right-handed 310
Helix 19
AC1
A
304 317Right-handed alpha
Helix 20
AC2
A
317 325Right-handed alpha
Helix 21
AC3
A
336 348Right-handed alpha
Helix 22
AC4
B
9 40Right-handed alpha
Helix 23
AC5
B
40 49Right-handed alpha
Helix 24
AC6
B
52 61Right-handed alpha
Helix 25
AC7
B
63 77Right-handed alpha
Helix 26
AC8
B
101 109Right-handed alpha
Helix 27
AC9
B
117 121Right-handed 310
Helix 28
AD1
B
122 129Right-handed alpha
Helix 29
AD2
B
130 141Right-handed alpha
Helix 30
AD3
B
145 149Right-handed 310
Helix 31
AD4
B
150 169Right-handed alpha
Helix 32
AD5
B
172 177Right-handed alpha
Helix 33
AD6
B
179 187Right-handed alpha
Helix 34
AD7
B
198 208Right-handed alpha
Helix 35
AD8
B
219 234Right-handed alpha
Helix 36
AD9
B
245 250Right-handed alpha
Helix 37
AE1
B
264 268Right-handed 310
Helix 38
AE2
B
270 281Right-handed alpha
Helix 39
AE3
B
298 302Right-handed 310
Helix 40
AE4
B
304 317Right-handed alpha
Helix 41
AE5
B
317 325Right-handed alpha
Helix 42
AE6
B
336 348Right-handed alpha
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There are 4 sheets in PDB entry 8G5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
97 99anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
213 217parallel
Strand 3
A
190 193parallel
Strand 4
A
256 262parallel
Strand 5
A
282 293parallel
Strand 6
A
362 368anti-parallel
Strand 7
A
351 355anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
97 99anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
213 217parallel
Strand 3
B
190 193parallel
Strand 4
B
256 262parallel
Strand 5
B
282 293parallel
Strand 6
B
362 368anti-parallel
Strand 7
B
351 355anti-parallel
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