Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G6B entry

There are 2 chains in PDB entry 8G6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 105	ALA 470
B	TYR 105	ALA 470

There are 20 helices in PDB entry 8G6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	115	Right-handed alpha
Helix 2	AA2	A	118	123	Right-handed alpha
Helix 3	AA3	A	175	179	Right-handed 310
Helix 4	AA4	A	195	202	Right-handed alpha
Helix 5	AA5	A	212	222	Right-handed alpha
Helix 6	AA6	A	282	285	Right-handed 310
Helix 7	AA7	A	297	302	Right-handed alpha
Helix 8	AA8	A	333	345	Right-handed alpha
Helix 9	AA9	A	356	364	Right-handed alpha
Helix 10	AB1	B	112	117	Right-handed 310
Helix 11	AB2	B	118	123	Right-handed alpha
Helix 12	AB3	B	175	179	Right-handed 310
Helix 13	AB4	B	195	202	Right-handed alpha
Helix 14	AB5	B	212	222	Right-handed alpha
Helix 15	AB6	B	282	285	Right-handed 310
Helix 16	AB7	B	297	302	Right-handed alpha
Helix 17	AB8	B	333	345	Right-handed alpha
Helix 18	AB9	B	356	364	Right-handed alpha
Helix 19	AC1	B	390	395	Right-handed 310
Helix 20	AC2	B	406	410	Right-handed 310

There are 13 sheets in PDB entry 8G6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	140	144	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	238	241	anti-parallel
Strand 4	A	246	249	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	158	first strand
Strand 2	A	276	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	224	226	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	306	316	anti-parallel
Strand 3	A	448	459	anti-parallel
Strand 4	A	429	433	anti-parallel
Strand 5	A	438	442	anti-parallel
Strand 6	A	327	330	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	306	316	anti-parallel
Strand 3	A	467	469	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	140	144	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	238	241	anti-parallel
Strand 4	B	246	249	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	276	280	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	372	375	anti-parallel
Strand 4	B	224	226	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	306	316	anti-parallel
Strand 3	B	448	459	anti-parallel
Strand 4	B	429	433	anti-parallel
Strand 5	B	438	442	anti-parallel
Strand 6	B	327	330	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	306	316	anti-parallel
Strand 3	B	467	469	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	368	first strand
Strand 2	B	404	405	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6B