Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G6D entry

There are 12 chains in PDB entry 8G6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 14	ARG 178
B	CYS 54	PRO 306
C	PRO 14	ARG 178
D	CYS 54	PRO 306
E	PRO 14	ARG 178
F	CYS 54	PRO 306
G	PRO 14	ARG 176
H	CYS 54	PRO 306
I	PRO 14	ARG 176
J	GLU 57	PRO 306
K	PRO 14	THR 177
L	CYS 54	PRO 306

There are 88 helices in PDB entry 8G6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	66	77	Right-handed alpha
Helix 3	AA3	A	130	140	Right-handed alpha
Helix 4	AA4	B	55	71	Right-handed alpha
Helix 5	AA5	B	71	82	Right-handed alpha
Helix 6	AA6	B	99	101	Right-handed 310
Helix 7	AA7	B	122	127	Right-handed alpha
Helix 8	AA8	B	136	147	Right-handed alpha
Helix 9	AA9	B	148	151	Right-handed 310
Helix 10	AB1	B	154	168	Right-handed alpha
Helix 11	AB2	B	171	181	Right-handed alpha
Helix 12	AB3	B	182	193	Right-handed alpha
Helix 13	AB4	B	227	238	Right-handed alpha
Helix 14	AB5	B	272	283	Right-handed alpha
Helix 15	AB6	B	286	301	Right-handed alpha
Helix 16	AB7	C	15	27	Right-handed alpha
Helix 17	AB8	C	66	77	Right-handed alpha
Helix 18	AB9	C	130	140	Right-handed alpha
Helix 19	AC1	D	55	70	Right-handed alpha
Helix 20	AC2	D	71	81	Right-handed alpha
Helix 21	AC3	D	99	101	Right-handed 310
Helix 22	AC4	D	122	128	Right-handed alpha
Helix 23	AC5	D	129	131	Right-handed 310
Helix 24	AC6	D	136	147	Right-handed alpha
Helix 25	AC7	D	148	151	Right-handed 310
Helix 26	AC8	D	154	168	Right-handed alpha
Helix 27	AC9	D	171	181	Right-handed alpha
Helix 28	AD1	D	183	193	Right-handed alpha
Helix 29	AD2	D	227	238	Right-handed alpha
Helix 30	AD3	D	272	283	Right-handed alpha
Helix 31	AD4	D	286	301	Right-handed alpha
Helix 32	AD5	E	15	27	Right-handed alpha
Helix 33	AD6	E	65	77	Right-handed alpha
Helix 34	AD7	E	130	140	Right-handed alpha
Helix 35	AD8	F	55	70	Right-handed alpha
Helix 36	AD9	F	71	81	Right-handed alpha
Helix 37	AE1	F	99	101	Right-handed 310
Helix 38	AE2	F	122	127	Right-handed alpha
Helix 39	AE3	F	136	147	Right-handed alpha
Helix 40	AE4	F	154	168	Right-handed alpha
Helix 41	AE5	F	171	181	Right-handed alpha
Helix 42	AE6	F	182	192	Right-handed alpha
Helix 43	AE7	F	227	238	Right-handed alpha
Helix 44	AE8	F	272	283	Right-handed alpha
Helix 45	AE9	F	286	301	Right-handed alpha
Helix 46	AF1	G	15	27	Right-handed alpha
Helix 47	AF2	G	65	77	Right-handed alpha
Helix 48	AF3	G	130	140	Right-handed alpha
Helix 49	AF4	H	55	71	Right-handed alpha
Helix 50	AF5	H	71	81	Right-handed alpha
Helix 51	AF6	H	99	101	Right-handed 310
Helix 52	AF7	H	122	127	Right-handed alpha
Helix 53	AF8	H	136	147	Right-handed alpha
Helix 54	AF9	H	154	168	Right-handed alpha
Helix 55	AG1	H	171	181	Right-handed alpha
Helix 56	AG2	H	182	193	Right-handed alpha
Helix 57	AG3	H	227	238	Right-handed alpha
Helix 58	AG4	H	272	283	Right-handed alpha
Helix 59	AG5	H	288	301	Right-handed alpha
Helix 60	AG6	I	15	27	Right-handed alpha
Helix 61	AG7	I	65	77	Right-handed alpha
Helix 62	AG8	I	130	140	Right-handed alpha
Helix 63	AG9	J	61	71	Right-handed alpha
Helix 64	AH1	J	71	82	Right-handed alpha
Helix 65	AH2	J	99	101	Right-handed 310
Helix 66	AH3	J	122	129	Right-handed alpha
Helix 67	AH4	J	136	147	Right-handed alpha
Helix 68	AH5	J	148	151	Right-handed 310
Helix 69	AH6	J	154	168	Right-handed alpha
Helix 70	AH7	J	171	181	Right-handed alpha
Helix 71	AH8	J	183	194	Right-handed alpha
Helix 72	AH9	J	227	238	Right-handed alpha
Helix 73	AI1	J	272	283	Right-handed alpha
Helix 74	AI2	J	288	301	Right-handed alpha
Helix 75	AI3	K	15	27	Right-handed alpha
Helix 76	AI4	K	65	77	Right-handed alpha
Helix 77	AI5	K	130	140	Right-handed alpha
Helix 78	AI6	L	55	71	Right-handed alpha
Helix 79	AI7	L	71	81	Right-handed alpha
Helix 80	AI8	L	99	101	Right-handed 310
Helix 81	AI9	L	122	127	Right-handed alpha
Helix 82	AJ1	L	136	147	Right-handed alpha
Helix 83	AJ2	L	154	168	Right-handed alpha
Helix 84	AJ3	L	171	181	Right-handed alpha
Helix 85	AJ4	L	183	193	Right-handed alpha
Helix 86	AJ5	L	227	238	Right-handed alpha
Helix 87	AJ6	L	272	283	Right-handed alpha
Helix 88	AJ7	L	286	301	Right-handed alpha

There are 29 sheets in PDB entry 8G6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	84	89	anti-parallel
Strand 4	A	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	161	170	anti-parallel
Strand 4	B	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	113	118	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	241	248	anti-parallel
Strand 3	B	251	258	anti-parallel
Strand 4	B	213	218	anti-parallel
Strand 5	B	201	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	84	89	anti-parallel
Strand 4	C	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	162	170	anti-parallel
Strand 4	C	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	162	170	anti-parallel
Strand 4	D	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	105	110	anti-parallel
Strand 4	D	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	241	248	anti-parallel
Strand 3	D	251	258	anti-parallel
Strand 4	D	213	218	anti-parallel
Strand 5	D	201	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	52	56	anti-parallel
Strand 3	E	94	99	anti-parallel
Strand 4	E	84	88	anti-parallel
Strand 5	E	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	150	158	anti-parallel
Strand 3	E	161	169	anti-parallel
Strand 4	E	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	91	first strand
Strand 2	F	113	118	anti-parallel
Strand 3	F	105	110	anti-parallel
Strand 4	F	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	241	248	anti-parallel
Strand 3	F	251	258	anti-parallel
Strand 4	F	213	218	anti-parallel
Strand 5	F	201	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	52	56	anti-parallel
Strand 3	G	94	99	anti-parallel
Strand 4	G	84	89	anti-parallel
Strand 5	G	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	64	first strand
Strand 2	G	150	158	anti-parallel
Strand 3	G	161	170	anti-parallel
Strand 4	G	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	64	first strand
Strand 2	G	150	158	anti-parallel
Strand 3	G	161	170	anti-parallel
Strand 4	H	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	113	118	anti-parallel
Strand 3	H	105	110	anti-parallel
Strand 4	H	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	97	first strand
Strand 2	H	241	248	anti-parallel
Strand 3	H	251	258	anti-parallel
Strand 4	H	212	218	anti-parallel
Strand 5	H	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	33	first strand
Strand 2	I	50	56	anti-parallel
Strand 3	I	94	99	anti-parallel
Strand 4	I	84	88	anti-parallel
Strand 5	I	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	64	first strand
Strand 2	I	150	158	anti-parallel
Strand 3	I	161	170	anti-parallel
Strand 4	I	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	64	first strand
Strand 2	I	150	158	anti-parallel
Strand 3	I	161	170	anti-parallel
Strand 4	J	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	89	91	first strand
Strand 2	J	113	118	anti-parallel
Strand 3	J	105	110	anti-parallel
Strand 4	J	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	97	first strand
Strand 2	J	241	248	anti-parallel
Strand 3	J	251	258	anti-parallel
Strand 4	J	213	219	anti-parallel
Strand 5	J	201	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	35	first strand
Strand 2	K	50	56	anti-parallel
Strand 3	K	94	99	anti-parallel
Strand 4	K	84	89	anti-parallel
Strand 5	K	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	62	64	first strand
Strand 2	K	150	158	anti-parallel
Strand 3	K	161	170	anti-parallel
Strand 4	K	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	62	64	first strand
Strand 2	K	150	158	anti-parallel
Strand 3	K	161	170	anti-parallel
Strand 4	L	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	91	first strand
Strand 2	L	113	118	anti-parallel
Strand 3	L	105	110	anti-parallel
Strand 4	L	223	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	97	first strand
Strand 2	L	241	248	anti-parallel
Strand 3	L	251	258	anti-parallel
Strand 4	L	214	218	anti-parallel
Strand 5	L	201	205	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6D