Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G6I entry

There are 3 chains in PDB entry 8G6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 2329
B	ASP 1	ARG 211
C	GLU 1	VAL 215

There are 20 helices in PDB entry 8G6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	172	Right-handed alpha
Helix 2	AA2	A	407	411	Right-handed 310
Helix 3	AA3	A	516	520	Right-handed 310
Helix 4	AA4	A	538	546	Right-handed alpha
Helix 5	AA5	A	586	595	Right-handed alpha
Helix 6	AA6	A	597	601	Right-handed 310
Helix 7	AA7	A	605	613	Right-handed alpha
Helix 8	AA8	A	1750	1754	Right-handed 310
Helix 9	AA9	A	1820	1824	Right-handed 310
Helix 10	AB1	A	1913	1917	Right-handed 310
Helix 11	AB2	A	1949	1953	Right-handed 310
Helix 12	AB3	A	2002	2007	Right-handed alpha
Helix 13	AB4	A	2047	2051	Right-handed 310
Helix 14	AB5	A	2186	2190	Right-handed 310
Helix 15	AB6	A	2204	2208	Right-handed 310
Helix 16	AB7	B	121	128	Right-handed alpha
Helix 17	AB8	B	182	189	Right-handed alpha
Helix 18	AB9	C	86	91	Right-handed 310
Helix 19	AC1	C	131	136	Right-handed alpha
Helix 20	AC2	C	189	194	Right-handed alpha

There are 23 sheets in PDB entry 8G6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	3	11	anti-parallel
Strand 3	A	84	91	parallel
Strand 4	A	139	140	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	175	180	parallel
Strand 3	A	157	159	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	232	234	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	326	327	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	293	294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	534	first strand
Strand 2	A	548	549	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	669	670	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1701	1706	first strand
Strand 2	A	1731	1736	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1773	1774	first strand
Strand 2	A	1814	1815	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1836	1837	first strand
Strand 2	A	1853	1854	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1877	1878	first strand
Strand 2	A	1940	1944	parallel
Strand 3	A	1985	1988	anti-parallel
Strand 4	A	1963	1964	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1933	1934	first strand
Strand 2	A	2015	2016	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2071	2074	first strand
Strand 2	A	2148	2155	anti-parallel
Strand 3	A	2100	2106	anti-parallel
Strand 4	A	2113	2114	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2071	2074	first strand
Strand 2	A	2148	2155	anti-parallel
Strand 3	A	2100	2106	anti-parallel
Strand 4	A	2126	2127	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2144	2145	first strand
Strand 2	A	2080	2085	anti-parallel
Strand 3	A	2165	2169	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2089	2091	first strand
Strand 2	A	2094	2096	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2293	2294	first strand
Strand 2	A	2244	2246	anti-parallel
Strand 3	A	2320	2321	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2260	2265	first strand
Strand 2	A	2305	2310	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	96	97	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	70	75	anti-parallel
Strand 3	B	62	67	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	89	90	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	45	46	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	22	23	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6I