Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G6P entry

There are 2 chains in PDB entry 8G6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ALA 234
A
 ALA 236THR 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8G6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
41 45Right-handed 310
Helix 3
AA3
A
60 63Right-handed 310
Helix 4
AA4
A
64 71Right-handed alpha
Helix 5
AA5
A
79 87Right-handed alpha
Helix 6
AA6
A
99 102Right-handed 310
Helix 7
AA7
A
103 112Right-handed alpha
Helix 8
AA8
A
114 118Right-handed 310
Helix 9
AA9
A
129 144Right-handed alpha
Helix 10
AB1
A
171 185Right-handed alpha
Helix 11
AB2
A
195 201Right-handed alpha
Helix 12
AB3
A
227 237Right-handed alpha
Helix 13
AB4
A
256 266Right-handed alpha
Helix 14
AB5
A
315 331Right-handed alpha
Helix 15
AB6
A
334 345Right-handed alpha
Helix 16
AB7
A
369 380Right-handed alpha
Helix 17
AB8
A
401 414Right-handed alpha
Helix 18
AB9
A
428 443Right-handed alpha
Helix 19
AC1
A
454 466Right-handed alpha
Helix 20
AC2
A
493 506Right-handed alpha
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There are 5 sheets in PDB entry 8G6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
34 35anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
75 78parallel
Strand 4
A
49 53parallel
Strand 5
A
37 39parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
189 193parallel
Strand 5
A
120 125parallel
Strand 6
A
211 214parallel
Strand 7
A
249 253parallel
Strand 8
A
269 273parallel
Strand 9
A
281 288parallel
Strand 10
A
294 299anti-parallel
Strand 11
A
305 310anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
361 365anti-parallel
Strand 3
A
471 475parallel
Strand 4
A
388 392parallel
Strand 5
A
416 419parallel
Strand 6
A
448 451parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 485first strand
Strand 2
A
488 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il