Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G6R entry

There are 5 chains in PDB entry 8G6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3SER 923
B
 ARG 79VAL 192
C
 LYS 2ASN 63
I
 A 14 A 33
J
 G 24 U 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8G6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
70 72Right-handed 310
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
117 126Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
147 153Right-handed 310
Helix 7
AA7
A
163 194Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
228 242Right-handed alpha
Helix 10
AB1
A
245 249Right-handed 310
Helix 11
AB2
A
262 267Right-handed 310
Helix 12
AB3
A
270 282Right-handed alpha
Helix 13
AB4
A
292 296Right-handed 310
Helix 14
AB5
A
298 314Right-handed alpha
Helix 15
AB6
A
363 372Right-handed alpha
Helix 16
AB7
A
372 379Right-handed alpha
Helix 17
AB8
A
411 422Right-handed alpha
Helix 18
AB9
A
442 449Right-handed alpha
Helix 19
AC1
A
450 454Right-handed 310
Helix 20
AC2
A
460 474Right-handed alpha
Helix 21
AC3
A
484 488Right-handed 310
Helix 22
AC4
A
498 503Right-handed alpha
Helix 23
AC5
A
506 514Right-handed alpha
Helix 24
AC6
A
515 527Right-handed alpha
Helix 25
AC7
A
556 577Right-handed alpha
Helix 26
AC8
A
591 602Right-handed alpha
Helix 27
AC9
A
616 621Right-handed alpha
Helix 28
AD1
A
624 635Right-handed alpha
Helix 29
AD2
A
642 658Right-handed alpha
Helix 30
AD3
A
681 704Right-handed alpha
Helix 31
AD4
A
705 710Right-handed 310
Helix 32
AD5
A
712 727Right-handed alpha
Helix 33
AD6
A
733 747Right-handed alpha
Helix 34
AD7
A
763 768Right-handed alpha
Helix 35
AD8
A
773 784Right-handed alpha
Helix 36
AD9
A
799 803Right-handed 310
Helix 37
AE1
A
828 837Right-handed alpha
Helix 38
AE2
A
847 862Right-handed alpha
Helix 39
AE3
A
863 867Right-handed 310
Helix 40
AE4
A
869 890Right-handed alpha
Helix 41
AE5
A
908 912Right-handed alpha
Helix 42
AE6
A
912 920Right-handed alpha
Helix 43
AE7
B
80 97Right-handed alpha
Helix 44
AE8
B
99 108Right-handed alpha
Helix 45
AE9
B
109 112Right-handed 310
Helix 46
AF1
B
119 125Right-handed alpha
Helix 47
AF2
B
134 142Right-handed alpha
Helix 48
AF3
B
168 174Right-handed alpha
Helix 49
AF4
B
175 180Right-handed 310
Helix 50
AF5
C
3 20Right-handed alpha
Helix 51
AF6
C
21 24Right-handed 310
Helix 52
AF7
C
25 42Right-handed alpha
Helix 53
AF8
C
44 63Right-handed alpha
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There are 11 sheets in PDB entry 8G6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
63 67anti-parallel
Strand 4
A
103 113anti-parallel
Strand 5
A
93 100anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
45 48anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
41 42anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
226 227parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
333 343anti-parallel
Strand 3
A
322 330anti-parallel
Strand 4
B
114 116anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
B
127 131parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
146 149anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
667 670anti-parallel
Strand 3
A
661 662anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
838 839anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
551 552anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 753first strand
Strand 2
A
756 762anti-parallel
Strand 3
A
607 611anti-parallel
Strand 4
A
795 797anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 817first strand
Strand 2
A
820 826anti-parallel
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