Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G6U entry

There are 18 chains in PDB entry 8G6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 32	ARG 504
B	GLY 521	GLU 662
C	GLN 1	VAL 111
D	ASP 1	VAL 106
M	GLN 1	SER 112
N	VAL 8	GLY 108
E	ASN 32	ARG 504
F	GLY 521	GLU 662
G	GLN 1	VAL 111
H	ASP 1	VAL 106
O	GLN 1	SER 112
P	VAL 8	GLY 108
I	ASN 32	ARG 504
J	GLY 521	GLU 662
K	GLN 1	VAL 111
L	ASP 1	VAL 106
Q	GLN 1	SER 112
R	VAL 8	GLY 108

There are 45 helices in PDB entry 8G6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	98	Right-handed 310
Helix 2	AA2	A	99	117	Right-handed alpha
Helix 3	AA3	A	334	353	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	476	481	Right-handed alpha
Helix 6	AA6	B	529	537	Right-handed alpha
Helix 7	AA7	B	569	596	Right-handed alpha
Helix 8	AA8	B	618	625	Right-handed alpha
Helix 9	AA9	B	627	635	Right-handed alpha
Helix 10	AB1	B	638	661	Right-handed alpha
Helix 11	AB2	C	83	87	Right-handed 310
Helix 12	AB3	D	79	83	Right-handed 310
Helix 13	AB4	M	83	87	Right-handed 310
Helix 14	AB5	M	100	100	Right-handed 310
Helix 15	AB6	N	79	84	Right-handed alpha
Helix 16	AB7	E	96	98	Right-handed 310
Helix 17	AB8	E	99	117	Right-handed alpha
Helix 18	AB9	E	334	353	Right-handed alpha
Helix 19	AC1	E	368	373	Right-handed alpha
Helix 20	AC2	E	476	481	Right-handed alpha
Helix 21	AC3	F	529	537	Right-handed alpha
Helix 22	AC4	F	569	596	Right-handed alpha
Helix 23	AC5	F	618	625	Right-handed alpha
Helix 24	AC6	F	627	635	Right-handed alpha
Helix 25	AC7	F	638	661	Right-handed alpha
Helix 26	AC8	G	83	87	Right-handed 310
Helix 27	AC9	H	79	83	Right-handed 310
Helix 28	AD1	O	83	87	Right-handed 310
Helix 29	AD2	O	100	100	Right-handed 310
Helix 30	AD3	P	79	84	Right-handed alpha
Helix 31	AD4	I	96	98	Right-handed 310
Helix 32	AD5	I	99	117	Right-handed alpha
Helix 33	AD6	I	334	353	Right-handed alpha
Helix 34	AD7	I	368	373	Right-handed alpha
Helix 35	AD8	I	476	481	Right-handed alpha
Helix 36	AD9	J	529	537	Right-handed alpha
Helix 37	AE1	J	569	596	Right-handed alpha
Helix 38	AE2	J	618	625	Right-handed alpha
Helix 39	AE3	J	627	635	Right-handed alpha
Helix 40	AE4	J	638	661	Right-handed alpha
Helix 41	AE5	K	83	87	Right-handed 310
Helix 42	AE6	L	79	83	Right-handed 310
Helix 43	AE7	Q	83	87	Right-handed 310
Helix 44	AE8	Q	100	100	Right-handed 310
Helix 45	AE9	R	79	84	Right-handed alpha

There are 57 sheets in PDB entry 8G6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	605	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	162	first strand
Strand 2	A	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	417	first strand
Strand 2	A	330	333	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	443	449	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	316	320	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	109	110	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	100	first strand
Strand 2	C	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	44	49	anti-parallel
Strand 6	D	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	88	100	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	88	100	anti-parallel
Strand 4	M	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	46	first strand
Strand 2	N	32	37	anti-parallel
Strand 3	N	86	91	anti-parallel
Strand 4	N	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	605	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	488	491	anti-parallel
Strand 3	E	223	227	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	236	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	162	first strand
Strand 2	E	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	183	first strand
Strand 2	E	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	452	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	393	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	414	417	first strand
Strand 2	E	330	333	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	443	449	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	316	320	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	109	110	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	89	96	anti-parallel
Strand 5	G	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	100	first strand
Strand 2	G	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	102	105	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	44	49	anti-parallel
Strand 6	H	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	24	first strand
Strand 2	H	70	75	anti-parallel
Strand 3	H	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	7	first strand
Strand 2	O	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	100	anti-parallel
Strand 4	O	33	38	anti-parallel
Strand 5	O	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	100	anti-parallel
Strand 4	O	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	45	46	first strand
Strand 2	P	32	37	anti-parallel
Strand 3	P	86	91	anti-parallel
Strand 4	P	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	494	499	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	J	603	605	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	488	491	anti-parallel
Strand 3	I	223	227	anti-parallel
Strand 4	I	242	245	anti-parallel
Strand 5	I	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	94	first strand
Strand 2	I	236	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	162	first strand
Strand 2	I	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	181	183	first strand
Strand 2	I	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	287	anti-parallel
Strand 3	I	452	456	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	357	361	parallel
Strand 6	I	393	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	414	417	first strand
Strand 2	I	330	333	anti-parallel
Strand 3	I	292	298	anti-parallel
Strand 4	I	443	449	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	304	308	first strand
Strand 2	I	316	320	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	424	first strand
Strand 2	I	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	109	110	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	45	52	anti-parallel
Strand 3	K	33	39	anti-parallel
Strand 4	K	89	96	anti-parallel
Strand 5	K	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	100	first strand
Strand 2	K	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	7	first strand
Strand 2	Q	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	11	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	100	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	11	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	100	anti-parallel
Strand 4	Q	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	45	46	first strand
Strand 2	R	32	37	anti-parallel
Strand 3	R	86	91	anti-parallel
Strand 4	R	101	102	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G6U