Analysis of interatomic Contacts of Structural Units in PDB entry:
8G72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G72 entry

There are 2 chains in PDB entry 8G72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1SER 128
B
 GLN 321SER 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8G72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 91Right-handed 310
Helix 2
AA2
A
112 116Right-handed 310
Helix 3
AA3
B
338 343Right-handed alpha
Helix 4
AA4
B
365 372Right-handed alpha
Helix 5
AA5
B
383 387Right-handed 310
Helix 6
AA6
B
405 407Right-handed 310
Helix 7
AA7
B
416 422Right-handed alpha
Helix 8
AA8
B
502 505Right-handed 310
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There are 4 sheets in PDB entry 8G72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
123 127parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
57 60anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
539 543parallel
Strand 3
B
546 554anti-parallel
Strand 4
B
584 588anti-parallel
Strand 5
B
575 577anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 436anti-parallel
Strand 5
B
376 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il