Analysis of interatomic Contacts of Structural Units in PDB entry:
8G78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G78 entry

There are 9 chains in PDB entry 8G78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 15	GLY 700
B	GLN 14	GLY 700
D	GLN 14	GLY 700
J	VAL 2	SER 114
F	VAL 2	GLY 119
G	VAL 2	GLY 119
H	VAL 2	SER 114
I	VAL 2	SER 114
E	VAL 2	GLY 119

There are 18 helices in PDB entry 8G78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	257	261	Right-handed 310
Helix 2	AA2	A	294	304	Right-handed alpha
Helix 3	AA3	B	294	304	Right-handed alpha
Helix 4	AA4	B	619	624	Right-handed alpha
Helix 5	AA5	B	638	642	Right-handed 310
Helix 6	AA6	D	294	304	Right-handed alpha
Helix 7	AA7	D	637	641	Right-handed 310
Helix 8	AA8	J	27	31	Right-handed 310
Helix 9	AA9	J	61	64	Right-handed 310
Helix 10	AB1	J	86	90	Right-handed 310
Helix 11	AB2	F	60	63	Right-handed 310
Helix 12	AB3	F	85	89	Right-handed 310
Helix 13	AB4	G	60	63	Right-handed 310
Helix 14	AB5	G	85	89	Right-handed 310
Helix 15	AB6	H	86	90	Right-handed 310
Helix 16	AB7	I	27	31	Right-handed 310
Helix 17	AB8	I	86	90	Right-handed 310
Helix 18	AB9	E	85	89	Right-handed 310

There are 41 sheets in PDB entry 8G78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	62	66	anti-parallel
Strand 3	A	264	268	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	222	229	anti-parallel
Strand 8	A	36	37	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	D	565	567	parallel
Strand 3	D	573	577	anti-parallel
Strand 4	D	584	588	anti-parallel
Strand 5	D	546	554	anti-parallel
Strand 6	D	538	543	anti-parallel
Strand 7	D	325	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	285	287	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	271	273	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	141	142	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	120	anti-parallel
Strand 5	A	127	131	anti-parallel
Strand 6	A	168	171	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	644	645	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	547	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	538	543	parallel
Strand 3	A	550	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	575	577	anti-parallel
Strand 6	A	565	566	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	692	696	parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	192	anti-parallel
Strand 6	B	203	209	anti-parallel
Strand 7	B	224	227	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	76	79	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	238	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	122	anti-parallel
Strand 5	B	125	131	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	238	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	241	243	anti-parallel
Strand 5	B	140	141	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel
Strand 6	B	565	566	anti-parallel
Strand 7	D	42	43	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	692	696	parallel
Strand 3	B	670	674	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	90	96	anti-parallel
Strand 5	D	188	197	anti-parallel
Strand 6	D	200	209	anti-parallel
Strand 7	D	222	230	anti-parallel
Strand 8	D	36	37	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	55	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	78	79	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	140	145	parallel
Strand 4	D	153	157	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	116	118	anti-parallel
Strand 5	D	128	135	anti-parallel
Strand 6	D	160	170	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	319	first strand
Strand 2	D	592	599	anti-parallel
Strand 3	D	609	613	anti-parallel
Strand 4	D	648	651	anti-parallel
Strand 5	D	643	645	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	655	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel
Strand 4	D	664	667	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	109	113	parallel
Strand 3	J	91	94	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	20	first strand
Strand 2	J	79	83	anti-parallel
Strand 3	J	67	70	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	98	first strand
Strand 2	J	102	103	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	21	first strand
Strand 2	F	76	81	anti-parallel
Strand 3	F	66	71	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	32	38	anti-parallel
Strand 4	F	90	95	anti-parallel
Strand 5	F	111	114	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	22	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	66	71	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	45	50	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	90	95	anti-parallel
Strand 5	G	111	114	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	108	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	108	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	102	104	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	18	first strand
Strand 2	H	82	83	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	77	80	anti-parallel
Strand 3	H	69	70	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	108	113	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	108	113	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	102	104	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	23	first strand
Strand 2	I	77	83	anti-parallel
Strand 3	I	68	70	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	22	first strand
Strand 2	E	76	82	anti-parallel
Strand 3	E	66	71	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	32	38	anti-parallel
Strand 4	E	90	95	anti-parallel
Strand 5	E	112	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G78

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G78