Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G7D entry

There are 2 chains in PDB entry 8G7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 40LEU 608
B
 PHE 41ASN 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8G7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 126Right-handed alpha
Helix 2
AA2
A
126 131Right-handed alpha
Helix 3
AA3
A
198 206Right-handed alpha
Helix 4
AA4
A
217 222Right-handed alpha
Helix 5
AA5
A
232 253Right-handed alpha
Helix 6
AA6
A
265 276Right-handed alpha
Helix 7
AA7
A
303 316Right-handed alpha
Helix 8
AA8
A
321 332Right-handed alpha
Helix 9
AA9
A
333 339Right-handed alpha
Helix 10
AB1
A
363 370Right-handed alpha
Helix 11
AB2
A
386 390Right-handed 310
Helix 12
AB3
A
405 416Right-handed alpha
Helix 13
AB4
A
424 435Right-handed alpha
Helix 14
AB5
A
437 441Right-handed 310
Helix 15
AB6
A
446 460Right-handed alpha
Helix 16
AB7
A
460 474Right-handed alpha
Helix 17
AB8
A
503 508Right-handed alpha
Helix 18
AB9
A
524 545Right-handed alpha
Helix 19
AC1
A
594 603Right-handed alpha
Helix 20
AC2
A
603 608Right-handed alpha
Helix 21
AC3
B
120 126Right-handed alpha
Helix 22
AC4
B
126 134Right-handed alpha
Helix 23
AC5
B
192 196Right-handed 310
Helix 24
AC6
B
198 206Right-handed alpha
Helix 25
AC7
B
217 222Right-handed alpha
Helix 26
AC8
B
232 253Right-handed alpha
Helix 27
AC9
B
265 276Right-handed alpha
Helix 28
AD1
B
303 316Right-handed alpha
Helix 29
AD2
B
321 332Right-handed alpha
Helix 30
AD3
B
333 339Right-handed alpha
Helix 31
AD4
B
363 370Right-handed alpha
Helix 32
AD5
B
386 390Right-handed 310
Helix 33
AD6
B
392 396Right-handed 310
Helix 34
AD7
B
402 416Right-handed alpha
Helix 35
AD8
B
424 435Right-handed alpha
Helix 36
AD9
B
437 441Right-handed 310
Helix 37
AE1
B
446 460Right-handed alpha
Helix 38
AE2
B
460 474Right-handed alpha
Helix 39
AE3
B
503 508Right-handed alpha
Helix 40
AE4
B
524 544Right-handed alpha
Helix 41
AE5
B
594 603Right-handed alpha
Helix 42
AE6
B
604 608Right-handed 310
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There are 4 sheets in PDB entry 8G7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
50 52anti-parallel
Strand 3
A
96 98parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
143 149anti-parallel
Strand 3
A
208 212anti-parallel
Strand 4
A
177 183parallel
Strand 5
A
254 264parallel
Strand 6
A
288 290parallel
Strand 7
A
378 383parallel
Strand 8
A
478 483parallel
Strand 9
A
581 583parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
50 52anti-parallel
Strand 3
B
96 98parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
177 183parallel
Strand 5
B
254 264parallel
Strand 6
B
286 290parallel
Strand 7
B
378 383parallel
Strand 8
B
478 483parallel
Strand 9
B
580 583parallel
Strand 10
B
589 590anti-parallel
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