Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G7U entry

There are 6 chains in PDB entry 8G7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 241	MET 923
B	SER 252	VAL 430
C	PRO 240	GLU 922
D	SER 252	VAL 430
X	G 2	A 24
Y	C 2	C 24

There are 47 helices in PDB entry 8G7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	255	Right-handed alpha
Helix 2	AA2	A	267	284	Right-handed alpha
Helix 3	AA3	A	299	314	Right-handed alpha
Helix 4	AA4	A	325	329	Right-handed 310
Helix 5	AA5	A	333	340	Right-handed alpha
Helix 6	AA6	A	347	358	Right-handed alpha
Helix 7	AA7	A	362	366	Right-handed 310
Helix 8	AA8	A	374	377	Right-handed 310
Helix 9	AA9	A	381	395	Right-handed alpha
Helix 10	AB1	A	419	433	Right-handed alpha
Helix 11	AB2	A	445	452	Right-handed alpha
Helix 12	AB3	A	470	487	Right-handed alpha
Helix 13	AB4	A	492	497	Right-handed alpha
Helix 14	AB5	A	506	521	Right-handed alpha
Helix 15	AB6	A	529	558	Right-handed alpha
Helix 16	AB7	A	559	578	Right-handed alpha
Helix 17	AB8	A	580	601	Right-handed alpha
Helix 18	AB9	A	602	607	Right-handed 310
Helix 19	AC1	A	608	625	Right-handed alpha
Helix 20	AC2	A	637	648	Right-handed alpha
Helix 21	AC3	A	744	769	Right-handed alpha
Helix 22	AC4	A	772	794	Right-handed alpha
Helix 23	AC5	A	837	840	Right-handed 310
Helix 24	AC6	A	889	892	Right-handed 310
Helix 25	AC7	A	907	911	Right-handed 310
Helix 26	AC8	C	245	250	Right-handed alpha
Helix 27	AC9	C	251	256	Right-handed alpha
Helix 28	AD1	C	268	283	Right-handed alpha
Helix 29	AD2	C	299	315	Right-handed alpha
Helix 30	AD3	C	333	338	Right-handed alpha
Helix 31	AD4	C	348	357	Right-handed alpha
Helix 32	AD5	C	362	366	Right-handed 310
Helix 33	AD6	C	374	377	Right-handed 310
Helix 34	AD7	C	381	395	Right-handed alpha
Helix 35	AD8	C	419	434	Right-handed alpha
Helix 36	AD9	C	445	450	Right-handed alpha
Helix 37	AE1	C	469	491	Right-handed alpha
Helix 38	AE2	C	492	496	Right-handed 310
Helix 39	AE3	C	506	521	Right-handed alpha
Helix 40	AE4	C	527	556	Right-handed alpha
Helix 41	AE5	C	559	576	Right-handed alpha
Helix 42	AE6	C	580	602	Right-handed alpha
Helix 43	AE7	C	608	625	Right-handed alpha
Helix 44	AE8	C	637	649	Right-handed alpha
Helix 45	AE9	C	746	769	Right-handed alpha
Helix 46	AF1	C	772	792	Right-handed alpha
Helix 47	AF2	C	836	840	Right-handed 310

There are 15 sheets in PDB entry 8G7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	407	409	parallel
Strand 3	A	369	372	parallel
Strand 4	A	293	296	parallel
Strand 5	A	343	344	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	462	first strand
Strand 2	A	739	742	parallel
Strand 3	A	712	715	parallel
Strand 4	A	630	634	parallel
Strand 5	A	693	696	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	819	first strand
Strand 2	A	807	809	anti-parallel
Strand 3	A	893	895	anti-parallel
Strand 4	A	902	903	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	823	825	anti-parallel
Strand 3	A	916	917	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	846	first strand
Strand 2	A	858	864	anti-parallel
Strand 3	A	874	877	anti-parallel
Strand 4	A	884	887	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	424	427	anti-parallel
Strand 3	B	313	318	anti-parallel
Strand 4	B	375	381	anti-parallel
Strand 5	B	386	390	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	412	416	anti-parallel
Strand 3	B	325	329	anti-parallel
Strand 4	B	348	351	anti-parallel
Strand 5	B	357	358	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	404	408	parallel
Strand 3	C	368	372	parallel
Strand 4	C	293	296	parallel
Strand 5	C	343	344	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	737	738	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	740	742	parallel
Strand 3	C	714	715	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	660	first strand
Strand 2	C	694	695	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	816	819	first strand
Strand 2	C	806	810	anti-parallel
Strand 3	C	892	896	anti-parallel
Strand 4	C	902	903	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	825	first strand
Strand 2	C	831	833	anti-parallel
Strand 3	C	883	887	anti-parallel
Strand 4	C	872	878	anti-parallel
Strand 5	C	857	864	anti-parallel
Strand 6	C	842	845	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	424	427	anti-parallel
Strand 3	D	313	318	anti-parallel
Strand 4	D	375	381	anti-parallel
Strand 5	D	386	390	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	412	416	anti-parallel
Strand 3	D	325	330	anti-parallel
Strand 4	D	346	351	anti-parallel
Strand 5	D	357	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7U