Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G7V entry

There are 6 chains in PDB entry 8G7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 241	MET 923
B	SER 252	VAL 430
C	PRO 240	ALA 921
D	SER 252	VAL 430
X	G 2	G 23
Y	C 2	C 24

There are 45 helices in PDB entry 8G7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	251	Right-handed alpha
Helix 2	AA2	A	251	256	Right-handed alpha
Helix 3	AA3	A	266	283	Right-handed alpha
Helix 4	AA4	A	299	312	Right-handed alpha
Helix 5	AA5	A	334	339	Right-handed alpha
Helix 6	AA6	A	347	358	Right-handed alpha
Helix 7	AA7	A	362	366	Right-handed 310
Helix 8	AA8	A	374	377	Right-handed 310
Helix 9	AA9	A	383	395	Right-handed alpha
Helix 10	AB1	A	419	435	Right-handed alpha
Helix 11	AB2	A	445	451	Right-handed alpha
Helix 12	AB3	A	469	488	Right-handed alpha
Helix 13	AB4	A	492	496	Right-handed 310
Helix 14	AB5	A	506	520	Right-handed alpha
Helix 15	AB6	A	530	558	Right-handed alpha
Helix 16	AB7	A	559	578	Right-handed alpha
Helix 17	AB8	A	580	602	Right-handed alpha
Helix 18	AB9	A	608	625	Right-handed alpha
Helix 19	AC1	A	641	648	Right-handed alpha
Helix 20	AC2	A	744	769	Right-handed alpha
Helix 21	AC3	A	772	794	Right-handed alpha
Helix 22	AC4	A	836	840	Right-handed 310
Helix 23	AC5	C	245	250	Right-handed alpha
Helix 24	AC6	C	250	255	Right-handed alpha
Helix 25	AC7	C	269	284	Right-handed alpha
Helix 26	AC8	C	299	315	Right-handed alpha
Helix 27	AC9	C	316	318	Right-handed 310
Helix 28	AD1	C	333	338	Right-handed alpha
Helix 29	AD2	C	347	357	Right-handed alpha
Helix 30	AD3	C	362	366	Right-handed 310
Helix 31	AD4	C	373	377	Right-handed 310
Helix 32	AD5	C	381	395	Right-handed alpha
Helix 33	AD6	C	419	434	Right-handed alpha
Helix 34	AD7	C	445	451	Right-handed alpha
Helix 35	AD8	C	469	491	Right-handed alpha
Helix 36	AD9	C	492	497	Right-handed alpha
Helix 37	AE1	C	506	521	Right-handed alpha
Helix 38	AE2	C	529	558	Right-handed alpha
Helix 39	AE3	C	559	576	Right-handed alpha
Helix 40	AE4	C	580	602	Right-handed alpha
Helix 41	AE5	C	608	625	Right-handed alpha
Helix 42	AE6	C	636	649	Right-handed alpha
Helix 43	AE7	C	746	769	Right-handed alpha
Helix 44	AE8	C	773	792	Right-handed alpha
Helix 45	AE9	C	837	841	Right-handed 310

There are 16 sheets in PDB entry 8G7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	369	372	parallel
Strand 3	A	407	408	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	462	first strand
Strand 2	A	737	742	parallel
Strand 3	A	712	715	parallel
Strand 4	A	630	634	parallel
Strand 5	A	693	696	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	819	first strand
Strand 2	A	807	810	anti-parallel
Strand 3	A	892	895	anti-parallel
Strand 4	A	902	903	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	823	825	anti-parallel
Strand 3	A	916	917	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	843	first strand
Strand 2	A	863	864	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	860	first strand
Strand 2	A	874	878	anti-parallel
Strand 3	A	883	887	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	424	427	anti-parallel
Strand 3	B	313	318	anti-parallel
Strand 4	B	375	380	anti-parallel
Strand 5	B	387	390	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	414	416	anti-parallel
Strand 3	B	325	328	anti-parallel
Strand 4	B	348	351	anti-parallel
Strand 5	B	357	360	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	404	409	parallel
Strand 3	C	368	371	parallel
Strand 4	C	293	296	parallel
Strand 5	C	343	344	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	462	first strand
Strand 2	C	737	742	parallel
Strand 3	C	714	715	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	816	819	first strand
Strand 2	C	806	810	anti-parallel
Strand 3	C	892	896	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	824	first strand
Strand 2	C	832	833	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	844	first strand
Strand 2	C	862	863	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	874	876	first strand
Strand 2	C	885	887	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	424	427	anti-parallel
Strand 3	D	314	318	anti-parallel
Strand 4	D	375	379	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	412	416	anti-parallel
Strand 3	D	325	330	anti-parallel
Strand 4	D	346	352	anti-parallel
Strand 5	D	356	360	anti-parallel
Strand 6	D	365	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7V