Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G7X entry

There are 2 chains in PDB entry 8G7X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 855	PRO 1103
B	ASN 856	ALA 1102

There are 16 helices in PDB entry 8G7X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	872	877	Right-handed 310
Helix 2	AA2	A	887	904	Right-handed alpha
Helix 3	AA3	A	906	910	Right-handed 310
Helix 4	AA4	A	965	970	Right-handed 310
Helix 5	AA5	A	987	997	Right-handed alpha
Helix 6	AA6	A	1002	1006	Right-handed 310
Helix 7	AA7	A	1025	1040	Right-handed alpha
Helix 8	AA8	A	1058	1066	Right-handed alpha
Helix 9	AA9	B	872	876	Right-handed 310
Helix 10	AB1	B	887	904	Right-handed alpha
Helix 11	AB2	B	906	910	Right-handed 310
Helix 12	AB3	B	965	970	Right-handed 310
Helix 13	AB4	B	987	997	Right-handed alpha
Helix 14	AB5	B	1003	1006	Right-handed 310
Helix 15	AB6	B	1025	1042	Right-handed alpha
Helix 16	AB7	B	1058	1066	Right-handed alpha

There are 6 sheets in PDB entry 8G7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	865	first strand
Strand 2	A	930	938	anti-parallel
Strand 3	A	943	948	anti-parallel
Strand 4	A	951	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1101	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1017	1021	anti-parallel
Strand 11	A	1008	1012	anti-parallel
Strand 12	A	984	986	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	865	first strand
Strand 2	A	930	938	anti-parallel
Strand 3	A	943	948	anti-parallel
Strand 4	A	951	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1101	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1067	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	880	first strand
Strand 2	A	883	884	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1073	1081	anti-parallel
Strand 10	B	1017	1022	anti-parallel
Strand 11	B	1008	1011	anti-parallel
Strand 12	B	985	986	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1073	1081	anti-parallel
Strand 10	B	1067	1069	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	884	first strand
Strand 2	B	878	880	anti-parallel
Strand 3	B	999	1001	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G7X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7X