Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G7Z entry

There are 4 chains in PDB entry 8G7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 40	LEU 608
B	ARG 40	LEU 608
C	ALA 83	GLY 289
D	ALA 83	GLY 289

There are 46 helices in PDB entry 8G7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	126	Right-handed alpha
Helix 2	AA2	A	126	134	Right-handed alpha
Helix 3	AA3	A	192	196	Right-handed 310
Helix 4	AA4	A	199	206	Right-handed alpha
Helix 5	AA5	A	217	222	Right-handed alpha
Helix 6	AA6	A	232	249	Right-handed alpha
Helix 7	AA7	A	250	252	Right-handed 310
Helix 8	AA8	A	265	275	Right-handed alpha
Helix 9	AA9	A	303	316	Right-handed alpha
Helix 10	AB1	A	321	331	Right-handed alpha
Helix 11	AB2	A	333	339	Right-handed alpha
Helix 12	AB3	A	363	368	Right-handed alpha
Helix 13	AB4	A	386	390	Right-handed 310
Helix 14	AB5	A	402	418	Right-handed alpha
Helix 15	AB6	A	425	435	Right-handed alpha
Helix 16	AB7	A	437	441	Right-handed 310
Helix 17	AB8	A	444	460	Right-handed alpha
Helix 18	AB9	A	460	473	Right-handed alpha
Helix 19	AC1	A	503	508	Right-handed alpha
Helix 20	AC2	A	509	513	Right-handed 310
Helix 21	AC3	A	524	545	Right-handed alpha
Helix 22	AC4	A	594	604	Right-handed alpha
Helix 23	AC5	A	605	608	Right-handed 310
Helix 24	AC6	B	120	126	Right-handed alpha
Helix 25	AC7	B	126	134	Right-handed alpha
Helix 26	AC8	B	192	196	Right-handed 310
Helix 27	AC9	B	199	206	Right-handed alpha
Helix 28	AD1	B	217	222	Right-handed alpha
Helix 29	AD2	B	232	249	Right-handed alpha
Helix 30	AD3	B	250	252	Right-handed 310
Helix 31	AD4	B	265	276	Right-handed alpha
Helix 32	AD5	B	303	316	Right-handed alpha
Helix 33	AD6	B	321	332	Right-handed alpha
Helix 34	AD7	B	335	340	Right-handed alpha
Helix 35	AD8	B	363	370	Right-handed alpha
Helix 36	AD9	B	402	418	Right-handed alpha
Helix 37	AE1	B	424	435	Right-handed alpha
Helix 38	AE2	B	437	441	Right-handed 310
Helix 39	AE3	B	444	460	Right-handed alpha
Helix 40	AE4	B	460	473	Right-handed alpha
Helix 41	AE5	B	503	508	Right-handed alpha
Helix 42	AE6	B	524	545	Right-handed alpha
Helix 43	AE7	B	594	604	Right-handed alpha
Helix 44	AE8	B	605	608	Right-handed 310
Helix 45	AE9	C	267	273	Right-handed alpha
Helix 46	AF1	D	268	274	Right-handed alpha

There are 9 sheets in PDB entry 8G7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	A	97	98	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	143	149	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	A	177	182	parallel
Strand 5	A	254	264	parallel
Strand 6	A	286	290	parallel
Strand 7	A	377	383	parallel
Strand 8	A	478	483	parallel
Strand 9	A	581	583	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	50	52	anti-parallel
Strand 3	B	96	98	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	72	73	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	177	182	parallel
Strand 5	B	254	264	parallel
Strand 6	B	286	290	parallel
Strand 7	B	377	383	parallel
Strand 8	B	478	483	parallel
Strand 9	B	580	583	parallel
Strand 10	B	589	590	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	174	181	anti-parallel
Strand 4	C	110	118	anti-parallel
Strand 5	C	257	263	anti-parallel
Strand 6	C	87	88	anti-parallel
Strand 7	C	286	287	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	147	153	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	124	131	anti-parallel
Strand 5	C	240	245	anti-parallel
Strand 6	C	94	99	anti-parallel
Strand 7	C	279	283	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	147	153	anti-parallel
Strand 3	D	138	144	anti-parallel
Strand 4	D	124	131	anti-parallel
Strand 5	D	240	245	anti-parallel
Strand 6	D	86	99	anti-parallel
Strand 7	D	257	263	anti-parallel
Strand 8	D	266	267	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	112	118	anti-parallel
Strand 5	D	257	263	anti-parallel
Strand 6	D	86	99	anti-parallel
Strand 7	D	279	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G7Z