Analysis of interatomic Contacts of Structural Units in PDB entry:
8G80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G80 entry

There are 4 chains in PDB entry 8G80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 40	LEU 608
B	ARG 40	LEU 608
C	ALA 83	GLY 289
D	ALA 83	GLY 289

There are 41 helices in PDB entry 8G80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	126	Right-handed alpha
Helix 2	AA2	A	126	134	Right-handed alpha
Helix 3	AA3	A	199	206	Right-handed alpha
Helix 4	AA4	A	217	222	Right-handed alpha
Helix 5	AA5	A	232	249	Right-handed alpha
Helix 6	AA6	A	250	253	Right-handed 310
Helix 7	AA7	A	265	276	Right-handed alpha
Helix 8	AA8	A	303	316	Right-handed alpha
Helix 9	AA9	A	321	330	Right-handed alpha
Helix 10	AB1	A	333	339	Right-handed alpha
Helix 11	AB2	A	363	368	Right-handed alpha
Helix 12	AB3	A	402	418	Right-handed alpha
Helix 13	AB4	A	420	424	Right-handed 310
Helix 14	AB5	A	425	435	Right-handed alpha
Helix 15	AB6	A	444	460	Right-handed alpha
Helix 16	AB7	A	460	474	Right-handed alpha
Helix 17	AB8	A	503	508	Right-handed alpha
Helix 18	AB9	A	524	545	Right-handed alpha
Helix 19	AC1	A	594	603	Right-handed alpha
Helix 20	AC2	A	603	608	Right-handed alpha
Helix 21	AC3	B	120	126	Right-handed alpha
Helix 22	AC4	B	126	134	Right-handed alpha
Helix 23	AC5	B	198	206	Right-handed alpha
Helix 24	AC6	B	217	222	Right-handed alpha
Helix 25	AC7	B	232	249	Right-handed alpha
Helix 26	AC8	B	265	274	Right-handed alpha
Helix 27	AC9	B	303	316	Right-handed alpha
Helix 28	AD1	B	321	330	Right-handed alpha
Helix 29	AD2	B	363	370	Right-handed alpha
Helix 30	AD3	B	402	418	Right-handed alpha
Helix 31	AD4	B	426	435	Right-handed alpha
Helix 32	AD5	B	437	441	Right-handed 310
Helix 33	AD6	B	447	460	Right-handed alpha
Helix 34	AD7	B	460	473	Right-handed alpha
Helix 35	AD8	B	503	508	Right-handed alpha
Helix 36	AD9	B	524	545	Right-handed alpha
Helix 37	AE1	B	594	604	Right-handed alpha
Helix 38	AE2	B	605	608	Right-handed 310
Helix 39	AE3	C	268	274	Right-handed alpha
Helix 40	AE4	D	101	105	Right-handed 310
Helix 41	AE5	D	268	273	Right-handed alpha

There are 10 sheets in PDB entry 8G80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	50	52	anti-parallel
Strand 3	A	96	98	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	143	149	anti-parallel
Strand 3	A	208	213	anti-parallel
Strand 4	A	179	182	parallel
Strand 5	A	259	264	parallel
Strand 6	A	286	290	parallel
Strand 7	A	377	383	parallel
Strand 8	A	478	483	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	581	first strand
Strand 2	A	589	590	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	50	52	anti-parallel
Strand 3	B	96	98	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	73	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	177	182	parallel
Strand 5	B	254	264	parallel
Strand 6	B	286	290	parallel
Strand 7	B	377	383	parallel
Strand 8	B	478	483	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	581	first strand
Strand 2	B	589	590	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	147	153	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	124	131	anti-parallel
Strand 5	C	240	245	anti-parallel
Strand 6	C	86	99	anti-parallel
Strand 7	C	257	263	anti-parallel
Strand 8	C	266	267	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	174	181	anti-parallel
Strand 4	C	110	118	anti-parallel
Strand 5	C	257	263	anti-parallel
Strand 6	C	86	99	anti-parallel
Strand 7	C	280	288	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	147	153	anti-parallel
Strand 3	D	138	144	anti-parallel
Strand 4	D	123	131	anti-parallel
Strand 5	D	240	245	anti-parallel
Strand 6	D	87	99	anti-parallel
Strand 7	D	257	263	anti-parallel
Strand 8	D	266	267	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	110	118	anti-parallel
Strand 5	D	257	263	anti-parallel
Strand 6	D	87	99	anti-parallel
Strand 7	D	279	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G80

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G80