Analysis of interatomic Contacts of Structural Units in PDB entry:
8G81

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G81 entry

There are 4 chains in PDB entry 8G81 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 40	LEU 608
B	ARG 40	LEU 608
C	ALA 83	GLY 289
D	ALA 83	GLY 289

There are 41 helices in PDB entry 8G81. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	126	Right-handed alpha
Helix 2	AA2	A	126	131	Right-handed alpha
Helix 3	AA3	A	199	206	Right-handed alpha
Helix 4	AA4	A	217	222	Right-handed alpha
Helix 5	AA5	A	232	253	Right-handed alpha
Helix 6	AA6	A	265	275	Right-handed alpha
Helix 7	AA7	A	303	316	Right-handed alpha
Helix 8	AA8	A	321	331	Right-handed alpha
Helix 9	AA9	A	333	339	Right-handed alpha
Helix 10	AB1	A	363	370	Right-handed alpha
Helix 11	AB2	A	405	418	Right-handed alpha
Helix 12	AB3	A	426	435	Right-handed alpha
Helix 13	AB4	A	444	460	Right-handed alpha
Helix 14	AB5	A	460	473	Right-handed alpha
Helix 15	AB6	A	503	508	Right-handed alpha
Helix 16	AB7	A	509	513	Right-handed 310
Helix 17	AB8	A	524	545	Right-handed alpha
Helix 18	AB9	A	594	604	Right-handed alpha
Helix 19	AC1	A	605	608	Right-handed 310
Helix 20	AC2	B	120	126	Right-handed alpha
Helix 21	AC3	B	126	134	Right-handed alpha
Helix 22	AC4	B	192	196	Right-handed 310
Helix 23	AC5	B	199	206	Right-handed alpha
Helix 24	AC6	B	217	222	Right-handed alpha
Helix 25	AC7	B	232	249	Right-handed alpha
Helix 26	AC8	B	265	274	Right-handed alpha
Helix 27	AC9	B	303	316	Right-handed alpha
Helix 28	AD1	B	321	332	Right-handed alpha
Helix 29	AD2	B	363	370	Right-handed alpha
Helix 30	AD3	B	402	418	Right-handed alpha
Helix 31	AD4	B	426	435	Right-handed alpha
Helix 32	AD5	B	437	441	Right-handed 310
Helix 33	AD6	B	444	446	Right-handed 310
Helix 34	AD7	B	447	460	Right-handed alpha
Helix 35	AD8	B	460	473	Right-handed alpha
Helix 36	AD9	B	503	508	Right-handed alpha
Helix 37	AE1	B	524	544	Right-handed alpha
Helix 38	AE2	B	594	604	Right-handed alpha
Helix 39	AE3	B	605	608	Right-handed 310
Helix 40	AE4	C	268	273	Right-handed alpha
Helix 41	AE5	D	267	274	Right-handed alpha

There are 9 sheets in PDB entry 8G81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	A	96	98	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	143	149	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	A	177	183	parallel
Strand 5	A	254	264	parallel
Strand 6	A	286	290	parallel
Strand 7	A	377	383	parallel
Strand 8	A	478	483	parallel
Strand 9	A	580	583	parallel
Strand 10	A	589	590	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	50	52	anti-parallel
Strand 3	B	96	98	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	72	73	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	177	182	parallel
Strand 5	B	254	264	parallel
Strand 6	B	286	290	parallel
Strand 7	B	377	383	parallel
Strand 8	B	478	483	parallel
Strand 9	B	580	583	parallel
Strand 10	B	589	590	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	163	first strand
Strand 2	C	147	153	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	123	131	anti-parallel
Strand 5	C	240	245	anti-parallel
Strand 6	C	86	99	anti-parallel
Strand 7	C	257	263	anti-parallel
Strand 8	C	266	267	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	174	181	anti-parallel
Strand 4	C	110	118	anti-parallel
Strand 5	C	257	263	anti-parallel
Strand 6	C	86	99	anti-parallel
Strand 7	C	279	287	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	110	118	anti-parallel
Strand 5	D	257	263	anti-parallel
Strand 6	D	87	88	anti-parallel
Strand 7	D	286	287	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	147	153	anti-parallel
Strand 3	D	138	144	anti-parallel
Strand 4	D	124	131	anti-parallel
Strand 5	D	240	245	anti-parallel
Strand 6	D	94	99	anti-parallel
Strand 7	D	279	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G81

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G81