Analysis of interatomic Contacts of Structural Units in PDB entry:
8G85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G85 entry

There are 12 chains in PDB entry 8G85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 32	VAL 505
B	ALA 512	ALA 662
D	GLU 32	VAL 505
E	ALA 512	ALA 662
J	GLU 32	VAL 505
K	ALA 512	ALA 662
H	VAL 2	SER 113
L	ASP 1	LEU 106
A	VAL 2	SER 113
C	ASP 1	LEU 106
F	VAL 2	SER 113
I	ASP 1	LEU 106

There are 48 helices in PDB entry 8G85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	99	115	Right-handed alpha
Helix 2	AA2	G	122	126	Right-handed 310
Helix 3	AA3	G	334	350	Right-handed alpha
Helix 4	AA4	G	368	373	Right-handed alpha
Helix 5	AA5	G	387	391	Right-handed 310
Helix 6	AA6	G	474	479	Right-handed 310
Helix 7	AA7	B	513	517	Right-handed 310
Helix 8	AA8	B	523	527	Right-handed 310
Helix 9	AA9	B	529	534	Right-handed alpha
Helix 10	AB1	B	536	543	Right-handed alpha
Helix 11	AB2	B	572	596	Right-handed alpha
Helix 12	AB3	B	627	633	Right-handed alpha
Helix 13	AB4	B	635	637	Right-handed 310
Helix 14	AB5	B	638	662	Right-handed alpha
Helix 15	AB6	D	98	115	Right-handed alpha
Helix 16	AB7	D	122	127	Right-handed 310
Helix 17	AB8	D	139	151	Right-handed 310
Helix 18	AB9	D	195	198	Right-handed 310
Helix 19	AC1	D	334	350	Right-handed alpha
Helix 20	AC2	D	368	373	Right-handed alpha
Helix 21	AC3	D	476	481	Right-handed alpha
Helix 22	AC4	E	513	517	Right-handed 310
Helix 23	AC5	E	531	535	Right-handed 310
Helix 24	AC6	E	536	542	Right-handed alpha
Helix 25	AC7	E	572	596	Right-handed alpha
Helix 26	AC8	E	618	622	Right-handed 310
Helix 27	AC9	E	630	636	Right-handed alpha
Helix 28	AD1	E	638	662	Right-handed alpha
Helix 29	AD2	J	98	115	Right-handed alpha
Helix 30	AD3	J	122	127	Right-handed 310
Helix 31	AD4	J	334	353	Right-handed alpha
Helix 32	AD5	J	368	373	Right-handed alpha
Helix 33	AD6	J	377	381	Right-handed 310
Helix 34	AD7	J	474	482	Right-handed 310
Helix 35	AD8	K	513	517	Right-handed 310
Helix 36	AD9	K	529	534	Right-handed alpha
Helix 37	AE1	K	575	596	Right-handed alpha
Helix 38	AE2	K	627	635	Right-handed alpha
Helix 39	AE3	K	638	662	Right-handed alpha
Helix 40	AE4	H	61	64	Right-handed 310
Helix 41	AE5	H	83	87	Right-handed 310
Helix 42	AE6	L	79	83	Right-handed 310
Helix 43	AE7	A	61	64	Right-handed 310
Helix 44	AE8	A	83	87	Right-handed 310
Helix 45	AE9	C	79	83	Right-handed 310
Helix 46	AF1	F	61	64	Right-handed 310
Helix 47	AF2	F	83	87	Right-handed 310
Helix 48	AF3	I	79	83	Right-handed 310

There are 42 sheets in PDB entry 8G85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	603	605	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	487	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	133	first strand
Strand 2	G	154	159	anti-parallel
Strand 3	G	172	177	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	192	193	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	283	302	anti-parallel
Strand 3	G	329	333	anti-parallel
Strand 4	G	414	420	anti-parallel
Strand 5	G	383	385	anti-parallel
Strand 6	G	374	376	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	283	302	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	466	470	anti-parallel
Strand 5	G	359	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	312	first strand
Strand 2	G	315	320	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	D	498	499	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	E	603	605	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	227	anti-parallel
Strand 4	D	243	245	anti-parallel
Strand 5	D	83	85	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	54	56	parallel
Strand 3	D	216	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	237	239	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	172	177	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	192	193	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	443	456	anti-parallel
Strand 3	D	283	298	anti-parallel
Strand 4	D	330	333	anti-parallel
Strand 5	D	414	419	anti-parallel
Strand 6	D	383	385	anti-parallel
Strand 7	D	374	376	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	283	298	anti-parallel
Strand 3	D	443	456	anti-parallel
Strand 4	D	467	470	anti-parallel
Strand 5	D	359	361	parallel
Strand 6	D	393	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	312	first strand
Strand 2	D	315	320	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	494	499	first strand
Strand 2	J	35	40	anti-parallel
Strand 3	K	603	609	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	46	first strand
Strand 2	J	486	491	anti-parallel
Strand 3	J	223	228	anti-parallel
Strand 4	J	242	245	anti-parallel
Strand 5	J	83	85	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	93	first strand
Strand 2	J	237	239	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	133	first strand
Strand 2	J	154	159	anti-parallel
Strand 3	J	172	177	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	181	182	first strand
Strand 2	J	192	193	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	259	261	first strand
Strand 2	J	441	456	anti-parallel
Strand 3	J	284	302	anti-parallel
Strand 4	J	330	333	anti-parallel
Strand 5	J	414	419	anti-parallel
Strand 6	J	383	385	anti-parallel
Strand 7	J	374	376	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	273	first strand
Strand 2	J	284	302	anti-parallel
Strand 3	J	441	456	anti-parallel
Strand 4	J	467	470	anti-parallel
Strand 5	J	359	361	parallel
Strand 6	J	393	395	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	305	312	first strand
Strand 2	J	315	319	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	423	425	first strand
Strand 2	J	433	435	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	99	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	99	103	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	102	105	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	44	52	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	99	103	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	102	105	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G85

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G85