Analysis of interatomic Contacts of Structural Units in PDB entry:
8G8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8G8V entry

There are 6 chains in PDB entry 8G8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LEU 153
A
 PRO 155PRO 155
A
 SER 157ARG 267
B
 GLN 14LEU 153
B
 PRO 155PRO 155
B
 SER 157ARG 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8G8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 77Right-handed alpha
Helix 2
AA2
A
82 97Right-handed alpha
Helix 3
AA3
A
154 161Right-handed alpha
Helix 4
AA4
A
183 195Right-handed alpha
Helix 5
AA5
A
204 218Right-handed alpha
Helix 6
AA6
A
221 235Right-handed alpha
Helix 7
AA7
B
17 21Right-handed 310
Helix 8
AA8
B
66 77Right-handed alpha
Helix 9
AA9
B
82 97Right-handed alpha
Helix 10
AB1
B
154 161Right-handed alpha
Helix 11
AB2
B
183 195Right-handed alpha
Helix 12
AB3
B
204 218Right-handed alpha
Helix 13
AB4
B
221 236Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8G8V.

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 39first strand
Strand 2
A
45 58anti-parallel
Strand 3
A
102 115anti-parallel
Strand 4
A
122 136anti-parallel
Strand 5
A
139 153anti-parallel
Strand 6
A
167 178anti-parallel
Strand 7
A
239 248anti-parallel
Strand 8
A
256 264anti-parallel
Strand 9
B
24 39anti-parallel
Strand 10
B
45 58anti-parallel
Strand 11
B
102 115anti-parallel
Strand 12
B
122 136anti-parallel
Strand 13
B
139 153anti-parallel
Strand 14
B
167 178anti-parallel
Strand 15
B
239 249anti-parallel
Strand 16
B
256 264anti-parallel
Strand 17
A
24 39anti-parallel
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