Analysis of interatomic Contacts of Structural Units in PDB entry:
8G8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G8Z entry

There are 8 chains in PDB entry 8G8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 9	G 38
B	C 1	G 31
G	PHE 8	ASP 233
H	VAL 5	ASP 233
K	ALA 2	LEU 80
R	G 1	G 48
I	VAL 2	ASP 1341
J	GLU 16	ARG 1373

There are105 helices in PDB entry 8G8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	212	229	Right-handed alpha
Helix 5	AA5	G	230	232	Right-handed 310
Helix 6	AA6	H	34	49	Right-handed alpha
Helix 7	AA7	H	77	86	Right-handed alpha
Helix 8	AA8	H	113	115	Right-handed 310
Helix 9	AA9	H	154	158	Right-handed 310
Helix 10	AB1	H	212	228	Right-handed alpha
Helix 11	AB2	K	6	13	Right-handed alpha
Helix 12	AB3	K	17	32	Right-handed alpha
Helix 13	AB4	K	48	56	Right-handed alpha
Helix 14	AB5	K	62	80	Right-handed alpha
Helix 15	AB6	I	4	10	Right-handed alpha
Helix 16	AB7	I	30	40	Right-handed alpha
Helix 17	AB8	I	48	57	Right-handed alpha
Helix 18	AB9	I	81	89	Right-handed alpha
Helix 19	AC1	I	163	167	Right-handed 310
Helix 20	AC2	I	205	212	Right-handed alpha
Helix 21	AC3	I	216	223	Right-handed alpha
Helix 22	AC4	I	242	247	Right-handed alpha
Helix 23	AC5	I	270	281	Right-handed alpha
Helix 24	AC6	I	288	293	Right-handed alpha
Helix 25	AC7	I	318	329	Right-handed alpha
Helix 26	AC8	I	347	354	Right-handed alpha
Helix 27	AC9	I	358	371	Right-handed alpha
Helix 28	AD1	I	379	389	Right-handed alpha
Helix 29	AD2	I	398	408	Right-handed alpha
Helix 30	AD3	I	421	438	Right-handed alpha
Helix 31	AD4	I	455	482	Right-handed alpha
Helix 32	AD5	I	494	508	Right-handed alpha
Helix 33	AD6	I	519	529	Right-handed alpha
Helix 34	AD7	I	551	555	Right-handed 310
Helix 35	AD8	I	663	668	Right-handed 310
Helix 36	AD9	I	670	674	Right-handed 310
Helix 37	AE1	I	675	683	Right-handed alpha
Helix 38	AE2	I	820	825	Right-handed alpha
Helix 39	AE3	I	860	865	Right-handed 310
Helix 40	AE4	I	942	980	Right-handed alpha
Helix 41	AE5	I	985	992	Right-handed alpha
Helix 42	AE6	I	1005	1038	Right-handed alpha
Helix 43	AE7	I	1081	1085	Right-handed 310
Helix 44	AE8	I	1101	1106	Right-handed alpha
Helix 45	AE9	I	1111	1134	Right-handed alpha
Helix 46	AF1	I	1137	1151	Right-handed alpha
Helix 47	AF2	I	1168	1177	Right-handed alpha
Helix 48	AF3	I	1185	1189	Right-handed 310
Helix 49	AF4	I	1191	1202	Right-handed alpha
Helix 50	AF5	I	1238	1242	Right-handed 310
Helix 51	AF6	I	1271	1281	Right-handed alpha
Helix 52	AF7	I	1284	1292	Right-handed alpha
Helix 53	AF8	I	1297	1311	Right-handed alpha
Helix 54	AF9	I	1320	1332	Right-handed alpha
Helix 55	AG1	J	26	34	Right-handed alpha
Helix 56	AG2	J	77	81	Right-handed 310
Helix 57	AG3	J	94	100	Right-handed 310
Helix 58	AG4	J	122	127	Right-handed alpha
Helix 59	AG5	J	131	140	Right-handed alpha
Helix 60	AG6	J	161	172	Right-handed alpha
Helix 61	AG7	J	181	192	Right-handed alpha
Helix 62	AG8	J	193	208	Right-handed alpha
Helix 63	AG9	J	210	230	Right-handed alpha
Helix 64	AH1	J	233	238	Right-handed 310
Helix 65	AH2	J	246	250	Right-handed 310
Helix 66	AH3	J	265	285	Right-handed alpha
Helix 67	AH4	J	288	308	Right-handed alpha
Helix 68	AH5	J	318	322	Right-handed 310
Helix 69	AH6	J	327	331	Right-handed 310
Helix 70	AH7	J	336	341	Right-handed alpha
Helix 71	AH8	J	370	377	Right-handed alpha
Helix 72	AH9	J	377	389	Right-handed alpha
Helix 73	AI1	J	393	404	Right-handed alpha
Helix 74	AI2	J	405	416	Right-handed alpha
Helix 75	AI3	J	430	432	Right-handed 310
Helix 76	AI4	J	450	454	Right-handed 310
Helix 77	AI5	J	473	483	Right-handed alpha
Helix 78	AI6	J	504	514	Right-handed alpha
Helix 79	AI7	J	529	539	Right-handed alpha
Helix 80	AI8	J	574	581	Right-handed alpha
Helix 81	AI9	J	598	613	Right-handed alpha
Helix 82	AJ1	J	614	634	Right-handed alpha
Helix 83	AJ2	J	640	644	Right-handed 310
Helix 84	AJ3	J	649	670	Right-handed alpha
Helix 85	AJ4	J	674	703	Right-handed alpha
Helix 86	AJ5	J	720	728	Right-handed alpha
Helix 87	AJ6	J	733	741	Right-handed alpha
Helix 88	AJ7	J	769	774	Right-handed alpha
Helix 89	AJ8	J	774	785	Right-handed alpha
Helix 90	AJ9	J	785	805	Right-handed alpha
Helix 91	AK1	J	834	839	Right-handed alpha
Helix 92	AK2	J	865	876	Right-handed alpha
Helix 93	AK3	J	914	925	Right-handed alpha
Helix 94	AK4	J	1068	1074	Right-handed alpha
Helix 95	AK5	J	1137	1147	Right-handed alpha
Helix 96	AK6	J	1216	1224	Right-handed alpha
Helix 97	AK7	J	1226	1234	Right-handed alpha
Helix 98	AK8	J	1234	1244	Right-handed alpha
Helix 99	AK9	J	1249	1261	Right-handed alpha
Helix 100	AL1	J	1282	1295	Right-handed alpha
Helix 101	AL2	J	1308	1313	Right-handed alpha
Helix 102	AL3	J	1318	1323	Right-handed alpha
Helix 103	AL4	J	1327	1339	Right-handed alpha
Helix 104	AL5	J	1348	1354	Right-handed alpha
Helix 105	AL6	J	1361	1373	Right-handed alpha

There are 43 sheets in PDB entry 8G8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	18	first strand
Strand 2	G	23	28	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	147	anti-parallel
Strand 3	G	55	61	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	153	first strand
Strand 2	G	175	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	28	first strand
Strand 2	H	200	207	anti-parallel
Strand 3	H	180	188	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	104	first strand
Strand 2	H	140	147	anti-parallel
Strand 3	H	55	61	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	75	first strand
Strand 2	I	93	104	anti-parallel
Strand 3	I	116	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	530	531	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	231	first strand
Strand 2	I	332	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	239	240	first strand
Strand 2	I	284	285	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	302	first strand
Strand 2	I	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	606	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	654	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	616	617	first strand
Strand 2	I	633	637	anti-parallel
Strand 3	I	642	646	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	700	701	first strand
Strand 2	I	1182	1183	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	749	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1233	anti-parallel
Strand 3	I	1065	1068	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	816	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1233	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	841	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	927	935	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1339	first strand
Strand 2	J	20	24	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	37	first strand
Strand 2	J	103	106	parallel
Strand 3	J	241	244	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	145	first strand
Strand 2	J	159	160	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	365	369	first strand
Strand 2	J	434	442	parallel
Strand 3	J	421	424	anti-parallel
Strand 4	J	465	469	anti-parallel
Strand 5	J	352	356	anti-parallel
Strand 6	J	447	448	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	708	first strand
Strand 2	J	713	715	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	821	822	first strand
Strand 2	J	880	883	anti-parallel
Strand 3	J	843	844	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	991	995	first strand
Strand 2	J	982	985	anti-parallel
Strand 3	J	956	960	anti-parallel
Strand 4	J	1010	1011	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel
Strand 3	J	1002	1003	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1024	1025	first strand
Strand 2	J	1124	1125	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1038	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1098	1099	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1050	first strand
Strand 2	J	1057	1061	anti-parallel
Strand 3	J	1106	1107	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1187	1190	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1161	1164	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G8Z